Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   GII80_RS17030 Genome accession   NZ_CP045821
Coordinates   3233630..3234274 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain MB8_B7     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3228630..3239274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII80_RS16995 (GII80_16995) mrpB 3229822..3230253 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  GII80_RS17000 (GII80_17000) mrpC 3230253..3230594 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  GII80_RS17005 (GII80_17005) mrpD 3230587..3232068 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  GII80_RS17010 (GII80_17010) mrpE 3232074..3232550 (+) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  GII80_RS17015 (GII80_17015) mrpF 3232550..3232834 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  GII80_RS17020 (GII80_17020) mnhG 3232818..3233192 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  GII80_RS17025 (GII80_17025) yuxO 3233231..3233611 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  GII80_RS17030 (GII80_17030) comA 3233630..3234274 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  GII80_RS17035 (GII80_17035) comP 3234355..3236664 (-) 2310 WP_015251333.1 two-component system sensor histidine kinase ComP Regulator
  GII80_RS17040 (GII80_17040) comX 3236679..3236846 (-) 168 WP_153932906.1 competence pheromone ComX Regulator
  GII80_RS17045 (GII80_17045) comQ 3236834..3237733 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  GII80_RS17050 (GII80_17050) degQ 3237918..3238058 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  GII80_RS17055 (GII80_17055) - 3238280..3238405 (+) 126 WP_003228793.1 hypothetical protein -
  GII80_RS17060 (GII80_17060) - 3238519..3238887 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=398086 GII80_RS17030 WP_003220716.1 3233630..3234274(-) (comA) [Bacillus subtilis strain MB8_B7]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=398086 GII80_RS17030 WP_003220716.1 3233630..3234274(-) (comA) [Bacillus subtilis strain MB8_B7]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment