Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   GII80_RS13190 Genome accession   NZ_CP045821
Coordinates   2533475..2533810 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain MB8_B7     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2528475..2538810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII80_RS13170 (GII80_13170) gcvT 2529067..2530155 (-) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -
  GII80_RS13175 (GII80_13175) hepAA 2530597..2532270 (+) 1674 WP_004398544.1 SNF2-related protein -
  GII80_RS13180 (GII80_13180) yqhG 2532291..2533085 (+) 795 WP_003230200.1 YqhG family protein -
  GII80_RS13185 (GII80_13185) sinI 2533268..2533441 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  GII80_RS13190 (GII80_13190) sinR 2533475..2533810 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  GII80_RS13195 (GII80_13195) tasA 2533903..2534688 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  GII80_RS13200 (GII80_13200) sipW 2534752..2535324 (-) 573 WP_003246088.1 signal peptidase I SipW -
  GII80_RS13205 (GII80_13205) tapA 2535308..2536069 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  GII80_RS13210 (GII80_13210) yqzG 2536341..2536667 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  GII80_RS13215 (GII80_13215) spoIITA 2536709..2536888 (-) 180 WP_003230176.1 YqzE family protein -
  GII80_RS13220 (GII80_13220) comGG 2536959..2537333 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  GII80_RS13225 (GII80_13225) comGF 2537334..2537717 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  GII80_RS13230 (GII80_13230) comGE 2537743..2538090 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  GII80_RS13235 (GII80_13235) comGD 2538074..2538505 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  GII80_RS13240 (GII80_13240) comGC 2538495..2538791 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=398065 GII80_RS13190 WP_003226345.1 2533475..2533810(+) (sinR) [Bacillus subtilis strain MB8_B7]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=398065 GII80_RS13190 WP_003226345.1 2533475..2533810(+) (sinR) [Bacillus subtilis strain MB8_B7]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment