Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   GII82_RS16250 Genome accession   NZ_CP045819
Coordinates   3139492..3140136 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain MB9_B4     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3134492..3145136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII82_RS16215 (GII82_16215) mrpB 3135684..3136115 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  GII82_RS16220 (GII82_16220) mrpC 3136115..3136456 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  GII82_RS16225 (GII82_16225) mrpD 3136449..3137930 (+) 1482 WP_029725869.1 Na+/H+ antiporter subunit D -
  GII82_RS16230 (GII82_16230) mrpE 3137936..3138412 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  GII82_RS16235 (GII82_16235) mrpF 3138412..3138696 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  GII82_RS16240 (GII82_16240) mnhG 3138680..3139054 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  GII82_RS16245 (GII82_16245) yuxO 3139093..3139473 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  GII82_RS16250 (GII82_16250) comA 3139492..3140136 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  GII82_RS16255 (GII82_16255) comP 3140217..3142526 (-) 2310 WP_015251333.1 two-component system sensor histidine kinase ComP Regulator
  GII82_RS16260 (GII82_16260) comX 3142541..3142708 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  GII82_RS16265 (GII82_16265) comQ 3142696..3143595 (-) 900 WP_015251332.1 ComX modifying isoprenyl transferase ComQ Regulator
  GII82_RS16270 (GII82_16270) degQ 3143780..3143920 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  GII82_RS16275 (GII82_16275) - 3144142..3144267 (+) 126 WP_003228793.1 hypothetical protein -
  GII82_RS16280 (GII82_16280) - 3144381..3144749 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=397921 GII82_RS16250 WP_003220716.1 3139492..3140136(-) (comA) [Bacillus subtilis strain MB9_B4]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=397921 GII82_RS16250 WP_003220716.1 3139492..3140136(-) (comA) [Bacillus subtilis strain MB9_B4]
ATAAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTTAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment