Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HRL54_RS05675 Genome accession   NZ_CP054191
Coordinates   1161452..1161967 (+) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain TH9F11     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1156452..1166967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRL54_RS05630 (HRL54_05575) csrA 1156904..1157089 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  HRL54_RS05660 (HRL54_05605) yqaB 1158682..1159248 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  HRL54_RS05665 (HRL54_05610) yqaA 1159245..1159673 (+) 429 WP_001287457.1 YqaA family protein -
  HRL54_RS05670 (HRL54_05615) gshA 1159746..1161302 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  HRL54_RS05675 (HRL54_05620) luxS 1161452..1161967 (+) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  HRL54_RS05680 (HRL54_05625) emrB 1162031..1163569 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  HRL54_RS05685 (HRL54_05630) emrA 1163586..1164758 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  HRL54_RS05690 (HRL54_05635) emrR 1164885..1165415 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  HRL54_RS05695 (HRL54_05640) ygaH 1165506..1165841 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  HRL54_RS05700 (HRL54_05645) ygaZ 1165831..1166568 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=397924 HRL54_RS05675 WP_001130207.1 1161452..1161967(+) (luxS) [Escherichia coli strain TH9F11]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=397924 HRL54_RS05675 WP_001130207.1 1161452..1161967(+) (luxS) [Escherichia coli strain TH9F11]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment