Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   GII83_RS12270 Genome accession   NZ_CP045818
Coordinates   2405990..2406325 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain MB9_B6     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2400990..2411325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII83_RS12250 (GII83_12250) gcvT 2401583..2402671 (-) 1089 WP_015714248.1 glycine cleavage system aminomethyltransferase GcvT -
  GII83_RS12255 (GII83_12255) hepAA 2403112..2404785 (+) 1674 WP_029726726.1 SNF2-related protein -
  GII83_RS12260 (GII83_12260) yqhG 2404806..2405600 (+) 795 WP_015714249.1 YqhG family protein -
  GII83_RS12265 (GII83_12265) sinI 2405783..2405956 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  GII83_RS12270 (GII83_12270) sinR 2405990..2406325 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  GII83_RS12275 (GII83_12275) tasA 2406418..2407203 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  GII83_RS12280 (GII83_12280) sipW 2407267..2407839 (-) 573 WP_072692741.1 signal peptidase I SipW -
  GII83_RS12285 (GII83_12285) tapA 2407823..2408584 (-) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  GII83_RS12290 (GII83_12290) yqzG 2408855..2409181 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  GII83_RS12295 (GII83_12295) spoIITA 2409223..2409402 (-) 180 WP_029726723.1 YqzE family protein -
  GII83_RS12300 (GII83_12300) comGG 2409474..2409848 (-) 375 WP_029726722.1 ComG operon protein ComGG Machinery gene
  GII83_RS12305 (GII83_12305) comGF 2409849..2410232 (-) 384 WP_029726721.1 ComG operon protein ComGF Machinery gene
  GII83_RS12310 (GII83_12310) comGE 2410258..2410605 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  GII83_RS12315 (GII83_12315) comGD 2410589..2411020 (-) 432 WP_029726720.1 comG operon protein ComGD Machinery gene
  GII83_RS12320 (GII83_12320) comGC 2411010..2411306 (-) 297 WP_029726719.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=397821 GII83_RS12270 WP_003226345.1 2405990..2406325(+) (sinR) [Bacillus subtilis strain MB9_B6]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=397821 GII83_RS12270 WP_003226345.1 2405990..2406325(+) (sinR) [Bacillus subtilis strain MB9_B6]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment