Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   GII85_RS12440 Genome accession   NZ_CP045817
Coordinates   2439565..2439900 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain P5_B1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2434565..2444900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII85_RS12420 (GII85_12420) gcvT 2435158..2436246 (-) 1089 WP_041850013.1 glycine cleavage system aminomethyltransferase GcvT -
  GII85_RS12425 (GII85_12425) hepAA 2436687..2438360 (+) 1674 WP_041850014.1 SNF2-related protein -
  GII85_RS12430 (GII85_12430) yqhG 2438381..2439175 (+) 795 WP_003230200.1 YqhG family protein -
  GII85_RS12435 (GII85_12435) sinI 2439358..2439531 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  GII85_RS12440 (GII85_12440) sinR 2439565..2439900 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  GII85_RS12445 (GII85_12445) tasA 2439993..2440778 (-) 786 WP_015251717.1 biofilm matrix protein TasA -
  GII85_RS12450 (GII85_12450) sipW 2440842..2441414 (-) 573 WP_003246088.1 signal peptidase I SipW -
  GII85_RS12455 (GII85_12455) tapA 2441398..2442159 (-) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  GII85_RS12460 (GII85_12460) yqzG 2442431..2442757 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  GII85_RS12465 (GII85_12465) spoIITA 2442799..2442978 (-) 180 WP_003230176.1 YqzE family protein -
  GII85_RS12470 (GII85_12470) comGG 2443049..2443423 (-) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  GII85_RS12475 (GII85_12475) comGF 2443424..2443807 (-) 384 WP_041850015.1 ComG operon protein ComGF Machinery gene
  GII85_RS12480 (GII85_12480) comGE 2443833..2444180 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  GII85_RS12485 (GII85_12485) comGD 2444164..2444595 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  GII85_RS12490 (GII85_12490) comGC 2444585..2444881 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=397742 GII85_RS12440 WP_003226345.1 2439565..2439900(+) (sinR) [Bacillus subtilis strain P5_B1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=397742 GII85_RS12440 WP_003226345.1 2439565..2439900(+) (sinR) [Bacillus subtilis strain P5_B1]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment