Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BSN5_RS06810 Genome accession   NC_014976
Coordinates   1260169..1260813 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis BSn5     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1255169..1265813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSN5_RS06775 (BSn5_06700) mrpB 1256361..1256792 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  BSN5_RS06780 (BSn5_06705) mrpC 1256792..1257133 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  BSN5_RS06785 (BSn5_06710) mrpD 1257126..1258607 (+) 1482 WP_015714622.1 Na+/H+ antiporter subunit D -
  BSN5_RS06790 (BSn5_06715) mrpE 1258613..1259089 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  BSN5_RS06795 (BSn5_06720) mrpF 1259089..1259373 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  BSN5_RS06800 (BSn5_06725) mnhG 1259357..1259731 (+) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  BSN5_RS06805 (BSn5_06730) yuxO 1259770..1260150 (-) 381 WP_015714624.1 hotdog fold thioesterase -
  BSN5_RS06810 (BSn5_06735) comA 1260169..1260813 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  BSN5_RS06815 (BSn5_06740) comP 1260894..1263206 (-) 2313 WP_015714625.1 histidine kinase Regulator
  BSN5_RS06820 (BSn5_06745) comX 1263222..1263443 (-) 222 WP_014114983.1 competence pheromone ComX -
  BSN5_RS06825 (BSn5_06750) - 1263440..1264309 (-) 870 WP_015714626.1 polyprenyl synthetase family protein -
  BSN5_RS06830 (BSn5_06755) degQ 1264494..1264634 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  BSN5_RS21935 - 1264856..1264981 (+) 126 WP_141770195.1 hypothetical protein -
  BSN5_RS06835 (BSn5_06760) - 1265096..1265464 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=39759 BSN5_RS06810 WP_003220716.1 1260169..1260813(-) (comA) [Bacillus subtilis BSn5]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=39759 BSN5_RS06810 WP_003220716.1 1260169..1260813(-) (comA) [Bacillus subtilis BSn5]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTCTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment