Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   HRE60_RS08210 Genome accession   NZ_CP054153
Coordinates   1836352..1838382 (-) Length   676 a.a.
NCBI ID   WP_274602630.1    Uniprot ID   -
Organism   Streptococcus salivarius strain DB-B5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1831352..1843382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRE60_RS08180 (HRE60_08180) - 1832594..1833562 (+) 969 WP_181670697.1 asparaginase -
  HRE60_RS08185 (HRE60_08185) - 1833566..1833709 (+) 144 WP_181670698.1 hypothetical protein -
  HRE60_RS08190 (HRE60_08190) - 1833759..1833971 (-) 213 WP_002884695.1 helix-turn-helix transcriptional regulator -
  HRE60_RS08195 (HRE60_08195) - 1833981..1834589 (-) 609 WP_181670699.1 DUF2975 domain-containing protein -
  HRE60_RS08200 (HRE60_08200) - 1834781..1835218 (-) 438 WP_181670700.1 hypothetical protein -
  HRE60_RS08205 (HRE60_08205) - 1835834..1836340 (-) 507 WP_181670701.1 hypothetical protein -
  HRE60_RS08210 (HRE60_08210) recG/mmsA 1836352..1838382 (-) 2031 WP_274602630.1 ATP-dependent DNA helicase RecG Machinery gene
  HRE60_RS08215 (HRE60_08215) alr 1838501..1839604 (-) 1104 WP_181670703.1 alanine racemase -
  HRE60_RS08220 (HRE60_08220) acpS 1839632..1839985 (-) 354 WP_014632616.1 holo-ACP synthase -
  HRE60_RS08225 (HRE60_08225) - 1839991..1841019 (-) 1029 WP_181670704.1 3-deoxy-7-phosphoheptulonate synthase -
  HRE60_RS08230 (HRE60_08230) - 1841104..1842135 (-) 1032 WP_014632614.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 676 a.a.        Molecular weight: 75791.19 Da        Isoelectric Point: 5.3797

>NTDB_id=397556 HRE60_RS08210 WP_274602630.1 1836352..1838382(-) (recG/mmsA) [Streptococcus salivarius strain DB-B5]
MIEDMIQLDSPIADLKGFGPKSAEKFTKLDLHTVGDLLLYFPFRYEDFKSKSIFELMDGEKAVITGTVVTPANVQYYGFK
RNRLSFKIKQGEAVIAISFFNQPYLVDKIEMGVEVAIFGKWDQKKSAVTGMKVLAQVEDDMQPVYHVAQGVSQAQLIKAI
KAAFDSGALNLLEESLPQVLMDKYRLMGRQEAVRAMHFPKDLAEYKQALRRTKFEELFYFQMNLQVLKAENKSETNGLAI
AYDEAKIKAKIAELPFPLTEAQQRSLSEILADMKSGAHMNRLLQGDVGSGKTVIASLAMYGAYTAGLQSALMVPTEILAE
QHYQSLQGLFPELEVVLLTSGMKAADKKVALSKIESGEAQMIVGTHSLIQDAVIYHRLGLVITDEQHRFGVNQRRIFREK
GDNPDVLMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKPIITRWVKHEQLDTVLTWIKGELEEDAQVYFISPLIEESEA
LDLKNAVALHQELTEFFGDSAKVALMHGRMKNDEKDQIMQEFKDKQSQILVSTTVIEVGVNVPNATVMIIMDADRFGLSQ
LHQLRGRVGRGDKQSYCVLVANPKNDTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYNIL
EEARRVASQIVSTPNWRENPDWQVLGAHLRSQGEFD

Nucleotide


Download         Length: 2031 bp        

>NTDB_id=397556 HRE60_RS08210 WP_274602630.1 1836352..1838382(-) (recG/mmsA) [Streptococcus salivarius strain DB-B5]
ATGATAGAGGATATGATTCAACTAGATTCACCGATTGCGGATTTGAAAGGCTTTGGGCCTAAGTCCGCTGAAAAATTTAC
CAAATTAGATTTGCACACGGTTGGGGACCTCTTGCTTTATTTTCCTTTCCGATATGAAGATTTTAAGAGTAAGTCTATCT
TTGAACTGATGGATGGCGAAAAGGCTGTTATTACGGGAACGGTGGTGACACCTGCCAATGTGCAGTATTATGGCTTTAAA
CGTAATCGTCTGAGTTTTAAAATCAAGCAAGGAGAGGCAGTGATTGCCATTAGTTTCTTCAACCAGCCTTATCTTGTAGA
CAAGATTGAGATGGGGGTAGAAGTGGCTATTTTTGGCAAATGGGACCAGAAGAAGTCGGCTGTGACTGGTATGAAAGTGT
TGGCCCAAGTTGAGGACGATATGCAGCCAGTCTATCATGTGGCCCAGGGTGTTAGTCAGGCCCAGCTGATAAAGGCTATA
AAGGCAGCTTTTGATAGTGGGGCCTTGAATTTGTTGGAGGAGAGTCTCCCACAGGTGCTTATGGACAAGTATCGTCTCAT
GGGACGCCAAGAGGCTGTGCGTGCTATGCATTTTCCGAAAGATTTGGCTGAATATAAGCAGGCTCTACGTAGGACAAAGT
TTGAGGAGCTCTTTTATTTCCAGATGAATTTACAGGTGCTGAAGGCTGAGAATAAGTCCGAAACCAATGGTCTAGCAATT
GCTTACGATGAAGCCAAAATCAAAGCCAAAATTGCAGAATTACCATTTCCCTTGACAGAAGCCCAACAGCGCAGTTTATC
GGAAATCCTAGCTGATATGAAATCTGGGGCTCATATGAATCGTCTCTTACAAGGAGATGTGGGCTCAGGGAAAACAGTTA
TCGCTAGCCTTGCCATGTATGGAGCCTACACGGCAGGCCTACAGTCTGCCCTCATGGTACCGACGGAAATCTTAGCTGAG
CAGCATTATCAGAGTTTGCAGGGGCTTTTCCCTGAGTTAGAGGTAGTGCTCTTAACTTCTGGGATGAAGGCAGCGGACAA
AAAAGTAGCTCTTTCTAAAATTGAATCTGGGGAGGCTCAGATGATAGTGGGGACTCATTCGTTGATTCAGGATGCTGTAA
TTTATCACAGGCTTGGGCTAGTAATTACTGATGAACAGCACCGTTTTGGGGTTAATCAACGTCGTATTTTCCGTGAGAAG
GGAGACAATCCTGATGTCCTCATGATGACAGCGACACCTATCCCTAGGACCTTGGCAATCACTGCCTTTGGAGAGATGGA
TGTGTCAATCATTGACCAGATGCCGGCTGGGCGTAAGCCCATTATTACCCGTTGGGTTAAACATGAGCAACTAGATACCG
TACTGACTTGGATCAAGGGTGAGTTGGAAGAAGATGCTCAGGTCTATTTTATCTCACCTCTGATTGAAGAGTCTGAGGCT
CTTGATTTGAAAAATGCGGTAGCTCTTCATCAGGAACTTACAGAGTTCTTTGGGGATTCAGCTAAAGTGGCTCTGATGCA
TGGTCGTATGAAAAATGATGAAAAAGACCAAATTATGCAGGAATTTAAGGACAAACAATCTCAGATTTTGGTATCAACCA
CAGTTATCGAAGTAGGAGTTAACGTGCCAAATGCTACGGTTATGATCATTATGGATGCGGATCGTTTTGGACTTAGCCAG
CTTCACCAACTTCGAGGACGTGTAGGTCGTGGAGATAAGCAGTCCTACTGTGTTTTAGTGGCCAATCCTAAAAATGATAC
CGGGAAAAAACGCATGCAGGCCATGTGTGAGACTACGGATGGTTTTGTTCTAGCAGAAGAGGACCTTAAAATGCGTGGTT
CAGGAGAGATCTTTGGGACACGTCAGTCAGGAATTCCTGAATTTCAAGTGGCTGATATTGTGGAAGACTATAATATTTTA
GAAGAAGCAAGGCGCGTGGCCAGCCAAATTGTATCTACCCCTAACTGGCGTGAGAATCCTGATTGGCAGGTGCTAGGAGC
TCATTTGAGAAGCCAAGGCGAGTTTGATTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(259-416)

RecG wedge domain (RecG_wedge)

(15-162)

Helicase conserved C-terminal domain (Helicase_C)

(463-571)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(598-671)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

71.237

99.26

0.707
  recG/mmsA Streptococcus pneumoniae R36A

71.237

99.26

0.707
  recG Bacillus subtilis subsp. subtilis str. 168

48.661

99.408

0.484
  recG Neisseria meningitidis strain C311

39.104

99.112

0.388

Multiple sequence alignment