Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   HQ612_RS09375 Genome accession   NZ_CP054054
Coordinates   1820792..1821466 (-) Length   224 a.a.
NCBI ID   WP_001238600.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SS111     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1815792..1826466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ612_RS09350 (HQ612_09320) dltC 1816408..1816647 (-) 240 WP_000351975.1 D-alanine--poly(phosphoribitol) ligase subunit DltC -
  HQ612_RS09355 (HQ612_09325) dltB 1816662..1817927 (-) 1266 WP_000613595.1 D-alanyl-lipoteichoic acid biosynthesis protein DltB -
  HQ612_RS09360 (HQ612_09330) dltA 1817924..1819459 (-) 1536 WP_000581010.1 D-alanine--poly(phosphoribitol) ligase subunit DltA -
  HQ612_RS09365 (HQ612_09335) - 1819472..1819594 (-) 123 WP_000806141.1 teichoic acid D-Ala incorporation-associated protein DltX -
  HQ612_RS09370 (HQ612_09340) dltS 1819605..1820792 (-) 1188 WP_000490535.1 two-component system sensor histidine kinase DltS -
  HQ612_RS09375 (HQ612_09345) ciaR 1820792..1821466 (-) 675 WP_001238600.1 two-component system response regulator DltR Regulator
  HQ612_RS09380 (HQ612_09350) rpmH 1821822..1821956 (-) 135 WP_000831903.1 50S ribosomal protein L34 -
  HQ612_RS09385 (HQ612_09355) - 1822140..1823495 (-) 1356 WP_000712231.1 YjiH family protein -
  HQ612_RS09390 (HQ612_09360) - 1823741..1825468 (-) 1728 WP_000429358.1 ABC transporter permease/substrate binding protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25521.52 Da        Isoelectric Point: 5.2130

>NTDB_id=397349 HQ612_RS09375 WP_001238600.1 1820792..1821466(-) (ciaR) [Streptococcus agalactiae strain SS111]
MRLLVVEDEKSIAEAIQALLADKGYSVDLVFDGDDGLEYILTGLYDLVLLDIMLPKRSGLSILKRVREAGLETPIIFLTA
KSQTYDKVNGLDLGADDYITKPFEADELLARIRLRTRQSSLIRANQLRLGNIRLNTDSHELESKESSVKLSNKEFLLMEV
FMRNAKQIIPKNQLISKVWGPSDNSEYNQLEVFISFLRKKLRFLKADIEIITTKGFGYSLEEMT

Nucleotide


Download         Length: 675 bp        

>NTDB_id=397349 HQ612_RS09375 WP_001238600.1 1820792..1821466(-) (ciaR) [Streptococcus agalactiae strain SS111]
ATGAGACTTCTTGTAGTTGAGGATGAAAAAAGTATAGCAGAGGCTATTCAGGCTTTATTGGCAGATAAAGGTTATTCTGT
TGATTTAGTATTTGATGGAGATGATGGGTTAGAATACATTTTGACAGGTCTCTATGATTTAGTCTTGTTGGATATTATGT
TACCCAAACGCTCAGGATTATCTATTTTAAAAAGAGTGAGGGAAGCTGGTTTAGAAACCCCAATAATCTTTTTAACTGCA
AAATCACAGACTTATGATAAAGTTAATGGTTTAGATTTAGGGGCAGATGATTATATCACAAAACCCTTTGAAGCAGATGA
ATTGCTAGCTAGAATTAGGTTGAGAACCAGACAATCTTCTCTGATCAGAGCAAATCAATTGCGGCTTGGAAATATAAGGC
TTAACACAGATTCACATGAGCTAGAATCTAAAGAAAGTAGTGTAAAATTATCCAATAAAGAATTTCTCTTGATGGAAGTT
TTTATGCGAAATGCAAAGCAGATTATTCCTAAAAACCAGTTGATTTCTAAGGTTTGGGGACCTTCAGACAATTCAGAATA
TAACCAGTTAGAAGTATTTATTTCTTTTTTGCGAAAAAAATTGCGCTTTTTAAAAGCAGACATTGAAATAATAACCACTA
AGGGCTTTGGATATTCCTTGGAGGAGATGACATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus mutans UA159

37.838

99.107

0.375
  ciaR Streptococcus pneumoniae Rx1

37.22

99.554

0.371
  ciaR Streptococcus pneumoniae D39

37.22

99.554

0.371
  ciaR Streptococcus pneumoniae R6

37.22

99.554

0.371
  ciaR Streptococcus pneumoniae TIGR4

37.22

99.554

0.371