Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | GE073_RS24830 | Genome accession | NZ_CP045802 |
| Coordinates | 5809315..5809884 (-) | Length | 189 a.a. |
| NCBI ID | WP_153784611.1 | Uniprot ID | - |
| Organism | Paenibacillus sp. B01 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 5776948..5810202 | 5809315..5809884 | within | 0 |
Gene organization within MGE regions
Location: 5776948..5810202
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GE073_RS24650 (GE073_24650) | - | 5776948..5777385 (-) | 438 | WP_028406245.1 | Hsp20/alpha crystallin family protein | - |
| GE073_RS24655 (GE073_24655) | - | 5777580..5778623 (-) | 1044 | WP_153784603.1 | ATP-binding protein | - |
| GE073_RS24660 (GE073_24660) | - | 5778782..5780956 (-) | 2175 | WP_153784604.1 | PAS domain S-box protein | - |
| GE073_RS24665 (GE073_24665) | tnpA | 5781326..5781799 (-) | 474 | WP_007128375.1 | IS200/IS605 family transposase | - |
| GE073_RS24670 (GE073_24670) | - | 5782050..5783464 (+) | 1415 | Protein_4880 | IS1182 family transposase | - |
| GE073_RS24675 (GE073_24675) | dpsA | 5783579..5784505 (-) | 927 | WP_128630792.1 | dipicolinate synthase subunit DpsA | - |
| GE073_RS24680 (GE073_24680) | - | 5784542..5784856 (-) | 315 | WP_021624005.1 | YunC family protein | - |
| GE073_RS24685 (GE073_24685) | - | 5785024..5786541 (-) | 1518 | WP_101807380.1 | phospholipase D-like domain-containing protein | - |
| GE073_RS24690 (GE073_24690) | - | 5786621..5786827 (-) | 207 | WP_101807379.1 | DUF1657 domain-containing protein | - |
| GE073_RS24695 (GE073_24695) | - | 5786916..5787335 (-) | 420 | WP_228551775.1 | CBO0543 family protein | - |
| GE073_RS24700 (GE073_24700) | - | 5787635..5788108 (-) | 474 | WP_153784605.1 | hypothetical protein | - |
| GE073_RS24705 (GE073_24705) | - | 5788645..5789742 (-) | 1098 | WP_194843488.1 | Ger(x)C family spore germination protein | - |
| GE073_RS24710 (GE073_24710) | - | 5789723..5790880 (-) | 1158 | WP_153784607.1 | GerAB/ArcD/ProY family transporter | - |
| GE073_RS24715 (GE073_24715) | - | 5790880..5792370 (-) | 1491 | WP_228551777.1 | spore germination protein | - |
| GE073_RS24720 (GE073_24720) | - | 5792907..5793110 (-) | 204 | WP_101807375.1 | hypothetical protein | - |
| GE073_RS24725 (GE073_24725) | - | 5793337..5793510 (+) | 174 | WP_153784608.1 | hypothetical protein | - |
| GE073_RS24730 (GE073_24730) | spoVAE | 5793685..5794035 (-) | 351 | WP_005832063.1 | stage V sporulation protein AE | - |
| GE073_RS24735 (GE073_24735) | spoVAD | 5794032..5795051 (-) | 1020 | WP_127510464.1 | stage V sporulation protein AD | - |
| GE073_RS24740 (GE073_24740) | spoVAC | 5795053..5795532 (-) | 480 | WP_005832062.1 | stage V sporulation protein AC | - |
| GE073_RS24745 (GE073_24745) | - | 5795569..5796429 (-) | 861 | WP_153784609.1 | DUF421 domain-containing protein | - |
| GE073_RS24750 (GE073_24750) | - | 5796640..5796846 (+) | 207 | WP_007781230.1 | DUF1657 domain-containing protein | - |
| GE073_RS24755 (GE073_24755) | - | 5797726..5798769 (-) | 1044 | WP_101807371.1 | hypothetical protein | - |
| GE073_RS26010 (GE073_24760) | - | 5798991..5799404 (-) | 414 | WP_280522965.1 | CBO0543 family protein | - |
| GE073_RS26115 (GE073_24765) | - | 5800311..5800385 (-) | 75 | WP_081494688.1 | CHASE3 domain-containing protein | - |
| GE073_RS26120 | - | 5800585..5801243 (-) | 659 | Protein_4900 | spore germination protein | - |
| GE073_RS24785 (GE073_24785) | - | 5801201..5801725 (-) | 525 | WP_035316911.1 | spore germination protein | - |
| GE073_RS24790 (GE073_24790) | - | 5802098..5802301 (-) | 204 | WP_101807367.1 | hypothetical protein | - |
| GE073_RS24795 (GE073_24795) | - | 5802499..5802747 (+) | 249 | WP_107338596.1 | YuzF family protein | - |
| GE073_RS24800 (GE073_24800) | - | 5802830..5803726 (+) | 897 | WP_054943616.1 | manganese catalase family protein | - |
| GE073_RS24805 (GE073_24805) | - | 5803864..5804310 (-) | 447 | WP_005828377.1 | DUF6262 family protein | - |
| GE073_RS24810 (GE073_24810) | - | 5804307..5805938 (-) | 1632 | WP_153784610.1 | tyrosine-type recombinase/integrase | - |
| GE073_RS24815 (GE073_24815) | - | 5805931..5807328 (-) | 1398 | WP_054943613.1 | tyrosine-type recombinase/integrase | - |
| GE073_RS24820 (GE073_24820) | - | 5807325..5808473 (-) | 1149 | WP_228551779.1 | tyrosine-type recombinase/integrase | - |
| GE073_RS24825 (GE073_24825) | rpsR | 5808688..5808972 (-) | 285 | WP_023559051.1 | 30S ribosomal protein S18 | - |
| GE073_RS24830 (GE073_24830) | ssbA | 5809315..5809884 (-) | 570 | WP_153784611.1 | single-stranded DNA-binding protein | Machinery gene |
| GE073_RS24835 (GE073_24835) | rpsF | 5809918..5810202 (-) | 285 | WP_153784612.1 | 30S ribosomal protein S6 | - |
Sequence
Protein
Download Length: 189 a.a. Molecular weight: 19849.47 Da Isoelectric Point: 4.8536
>NTDB_id=397347 GE073_RS24830 WP_153784611.1 5809315..5809884(-) (ssbA) [Paenibacillus sp. B01]
MLNRVILIGRLTRDPELRYTPSGVAVTQFTLAVDRPFNSQSGEREADFIPIVTWRQLAETCANYLRKGRLAAVEGRMQVR
NYENNEGKRVYVTEIIADNVRFLESGNRENAPREEGSYSGGGSSGNGGGGGNYGGGNGGYGGGGQSGGGSQGGGSYGGNR
GGGGGSSNSRDPFSDDGRPIDISEDDLPF
MLNRVILIGRLTRDPELRYTPSGVAVTQFTLAVDRPFNSQSGEREADFIPIVTWRQLAETCANYLRKGRLAAVEGRMQVR
NYENNEGKRVYVTEIIADNVRFLESGNRENAPREEGSYSGGGSSGNGGGGGNYGGGNGGYGGGGQSGGGSQGGGSYGGNR
GGGGGSSNSRDPFSDDGRPIDISEDDLPF
Nucleotide
Download Length: 570 bp
>NTDB_id=397347 GE073_RS24830 WP_153784611.1 5809315..5809884(-) (ssbA) [Paenibacillus sp. B01]
ATGTTGAACCGTGTCATTCTGATCGGCAGGCTCACCCGAGATCCGGAGCTTCGCTATACCCCTTCGGGAGTTGCGGTCAC
GCAATTCACGCTGGCGGTGGATCGGCCCTTCAACAGCCAATCCGGCGAGCGCGAAGCCGATTTCATTCCGATCGTCACCT
GGAGGCAGCTTGCCGAAACCTGCGCCAACTATTTGCGCAAAGGTCGTCTGGCAGCAGTCGAAGGCCGGATGCAAGTCCGG
AACTATGAGAACAACGAAGGCAAGCGCGTCTACGTGACGGAAATCATTGCCGACAATGTTCGGTTCCTGGAGTCCGGCAA
CCGCGAGAACGCTCCGCGTGAGGAAGGCTCTTACAGCGGCGGCGGAAGCAGCGGCAACGGCGGCGGCGGTGGAAATTACG
GCGGCGGCAACGGAGGCTACGGCGGCGGCGGCCAATCGGGCGGCGGAAGCCAAGGCGGAGGTTCCTACGGGGGCAATCGC
GGCGGCGGTGGTGGTTCTTCCAACAGCCGGGATCCATTCTCGGATGACGGACGTCCGATCGACATCTCCGAAGATGATTT
GCCATTTTAG
ATGTTGAACCGTGTCATTCTGATCGGCAGGCTCACCCGAGATCCGGAGCTTCGCTATACCCCTTCGGGAGTTGCGGTCAC
GCAATTCACGCTGGCGGTGGATCGGCCCTTCAACAGCCAATCCGGCGAGCGCGAAGCCGATTTCATTCCGATCGTCACCT
GGAGGCAGCTTGCCGAAACCTGCGCCAACTATTTGCGCAAAGGTCGTCTGGCAGCAGTCGAAGGCCGGATGCAAGTCCGG
AACTATGAGAACAACGAAGGCAAGCGCGTCTACGTGACGGAAATCATTGCCGACAATGTTCGGTTCCTGGAGTCCGGCAA
CCGCGAGAACGCTCCGCGTGAGGAAGGCTCTTACAGCGGCGGCGGAAGCAGCGGCAACGGCGGCGGCGGTGGAAATTACG
GCGGCGGCAACGGAGGCTACGGCGGCGGCGGCCAATCGGGCGGCGGAAGCCAAGGCGGAGGTTCCTACGGGGGCAATCGC
GGCGGCGGTGGTGGTTCTTCCAACAGCCGGGATCCATTCTCGGATGACGGACGTCCGATCGACATCTCCGAAGATGATTT
GCCATTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
53.439 |
100 |
0.534 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
45.263 |
100 |
0.455 |