Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   N028_RS07775 Genome accession   NZ_CP045799
Coordinates   1667563..1669779 (+) Length   738 a.a.
NCBI ID   WP_024639311.1    Uniprot ID   -
Organism   Pseudomonas syringae USA011     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1662563..1674779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N028_RS07760 (N028_07760) - 1664902..1665525 (+) 624 WP_024639309.1 glutathione S-transferase -
  N028_RS07765 (N028_07765) - 1665709..1666641 (+) 933 WP_003317464.1 ABC transporter ATP-binding protein -
  N028_RS07770 (N028_07770) - 1666638..1667426 (+) 789 WP_024639310.1 ABC transporter permease -
  N028_RS07775 (N028_07775) comA 1667563..1669779 (+) 2217 WP_024639311.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N028_RS07780 (N028_07780) exbB 1669822..1670538 (+) 717 WP_080393564.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N028_RS07785 (N028_07785) - 1670535..1670966 (+) 432 WP_024639313.1 ExbD/TolR family protein -
  N028_RS07790 (N028_07790) lpxK 1670966..1671961 (+) 996 WP_024639314.1 tetraacyldisaccharide 4'-kinase -
  N028_RS07795 (N028_07795) - 1671979..1672164 (+) 186 WP_002552679.1 Trm112 family protein -
  N028_RS07800 (N028_07800) kdsB 1672161..1672925 (+) 765 WP_024639315.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N028_RS07805 (N028_07805) murB 1672960..1673979 (+) 1020 WP_024639316.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80274.45 Da        Isoelectric Point: 10.3501

>NTDB_id=397307 N028_RS07775 WP_024639311.1 1667563..1669779(+) (comA) [Pseudomonas syringae USA011]
MRTGMIALALGLLALRFLPALPPTWLLLLMPILALMLLPFRTYPLAFFLLGFTWACVSAQWALSDRLAQRLDGQTLWVQG
KVVGLPSVAEGVVRFELEDAWSRRARLPARIRMAWYGGQPVNSGERWRMAIKLKRPAGLVNPDAFDYEAWLLAQRIGATG
TVVDGQLLAPARAAWRDAIRQRLLAVDAQGREGGLAALVLGDGSGLSSTDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRFLPWLPSACALAFSAALGYGLLAGFEVPVRRACVMVAMVLLWRLRFRHLGVVWPLLLSFNAVLIFEPL
VTLQPGFWLSFAAVGILILIFSGRLGAWSWWQSWTRAQWLIAVGLLPILLALNLPISLSGPFANLLAVPWVSVIVLPPAL
LGTLLLPVPVVGEGLLWLAGGALQGLFVFLGAVAAALPAWLPSAVPVWAWWLSLLGALLLLLPKGVPLRPLGWPLLLLCV
FPPLESVPEGQVDVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKAGVRHLDLMLISHSDADHAGGA
AAVHQAFPVARVLGGELARLAPQLDARLCESGARWEWDGVVFSTWRWEQGPDGNPASCILSVDARGERLLLAGDIDVHAE
RAAIDSGFDLRAHWLQSPHHGSRTSSSKAFLRAVAPVGVLISRGRNNAFGHPHPLVMARYRGLGIASYDSAELGAVRLQL
GTFGTPQAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=397307 N028_RS07775 WP_024639311.1 1667563..1669779(+) (comA) [Pseudomonas syringae USA011]
ATGCGCACAGGGATGATCGCGCTCGCGCTCGGGCTGCTTGCCCTGCGTTTTCTACCGGCGCTGCCGCCGACCTGGCTACT
GCTGCTGATGCCGATACTGGCGTTGATGTTGCTGCCGTTCCGTACCTATCCGCTGGCGTTCTTTCTGCTCGGTTTCACCT
GGGCCTGCGTTTCGGCGCAGTGGGCATTGAGTGACCGCTTGGCGCAGCGTCTCGATGGTCAGACGCTGTGGGTGCAGGGC
AAGGTGGTCGGTTTGCCCAGTGTCGCCGAAGGTGTGGTGCGCTTTGAACTGGAAGATGCCTGGTCACGACGTGCCAGGCT
GCCGGCGCGAATCCGCATGGCGTGGTACGGCGGCCAGCCCGTAAACAGCGGCGAGCGCTGGCGCATGGCGATCAAACTCA
AGCGGCCGGCCGGGCTGGTCAATCCGGATGCTTTCGACTACGAAGCCTGGCTACTGGCGCAGCGCATCGGTGCGACCGGC
ACGGTAGTGGATGGTCAGCTATTGGCACCCGCGCGTGCCGCCTGGCGCGATGCCATTCGTCAGCGCCTGCTGGCGGTCGA
TGCGCAGGGCCGGGAGGGCGGTCTGGCGGCGCTCGTGCTGGGCGATGGCTCAGGGCTGTCGAGCACCGACTGGCAGGTGT
TGCAGGATACTGGCACTGTGCATCTGCTGGTCATTTCCGGCCAGCACATCGGTTTGCTGGCCGGCGTGATCTACGCGCTG
GTCGCAGGCCTGGCGCGCTGGGGGCTGTGGCCACGCTTTTTGCCCTGGCTGCCGTCGGCGTGTGCACTGGCGTTCAGTGC
TGCACTGGGCTACGGACTGCTGGCCGGTTTCGAGGTGCCGGTCCGGCGAGCCTGTGTGATGGTCGCGATGGTGCTGCTGT
GGCGCTTGCGTTTTCGTCACCTGGGCGTGGTCTGGCCTTTGTTGCTGTCCTTCAACGCGGTGCTGATCTTCGAGCCGCTG
GTGACGCTGCAGCCGGGTTTCTGGCTGTCCTTCGCGGCGGTCGGCATTCTGATCCTGATTTTCAGCGGGCGTCTTGGCGC
CTGGAGCTGGTGGCAAAGCTGGACACGGGCGCAATGGCTGATCGCCGTTGGCTTGTTGCCGATCCTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGCGGCCCGTTTGCCAACCTGCTTGCGGTGCCTTGGGTCAGCGTGATTGTCCTGCCGCCGGCATTG
CTCGGAACGCTGTTGCTGCCAGTCCCCGTGGTCGGGGAAGGTCTGCTCTGGCTGGCGGGCGGGGCGCTGCAGGGGCTGTT
CGTATTCCTCGGCGCGGTGGCCGCCGCATTGCCGGCCTGGTTGCCCAGTGCCGTGCCGGTCTGGGCATGGTGGTTGAGTC
TGCTCGGGGCCTTGCTCCTGTTGCTGCCCAAGGGCGTGCCCCTGCGTCCGCTGGGCTGGCCGTTGCTGTTGCTGTGCGTT
TTTCCGCCGCTCGAATCAGTGCCTGAAGGTCAGGTCGATGTGTTGCAACTGGATGTGGGGCAGGGCCTGGCGATTCTCCT
GCGCACCCGCAATCACACACTCCTGTATGACGCAGGTCCACGTTTCGGTGAGTTCGATATCGGTCAGCGCGTGGTCGTGC
CCGCCATGCGCAAGGCGGGTGTCCGCCATCTTGACCTGATGTTGATCAGCCATTCCGACGCAGACCATGCCGGAGGTGCA
GCAGCGGTTCATCAGGCCTTTCCGGTGGCCCGCGTGCTAGGCGGTGAGCTGGCCCGCCTCGCGCCGCAACTCGACGCCCG
ACTGTGCGAGAGCGGTGCACGCTGGGAGTGGGATGGCGTGGTGTTTTCCACGTGGCGCTGGGAGCAGGGGCCTGACGGCA
ATCCGGCCTCCTGCATCCTCAGCGTCGACGCCAGGGGCGAGCGTCTGCTGCTGGCGGGCGATATCGACGTGCACGCCGAG
CGTGCGGCGATCGACAGCGGGTTCGACCTTCGTGCCCACTGGTTGCAGTCGCCGCATCACGGCAGCCGTACCTCGTCGTC
CAAAGCATTTCTGCGCGCCGTGGCACCGGTTGGCGTGCTGATTTCCCGTGGTCGCAACAACGCGTTCGGTCACCCGCATC
CGTTGGTCATGGCGCGCTATCGAGGCCTGGGCATCGCCAGTTACGACAGTGCCGAGCTGGGCGCGGTCCGTCTGCAACTG
GGGACATTCGGAACGCCACAGGCCGAGCGCGCGCAACGGCGCTTCTGGCGTGATTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)

Domain of unknown function (DUF4131) (DUF4131)

(21-166)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.43

97.019

0.606
  comA Ralstonia pseudosolanacearum GMI1000

34.793

100

0.398

Multiple sequence alignment