Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   N028_RS07780 Genome accession   NZ_CP045799
Coordinates   1669822..1670538 (+) Length   238 a.a.
NCBI ID   WP_080393564.1    Uniprot ID   -
Organism   Pseudomonas syringae USA011     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1664822..1675538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N028_RS07760 (N028_07760) - 1664902..1665525 (+) 624 WP_024639309.1 glutathione S-transferase -
  N028_RS07765 (N028_07765) - 1665709..1666641 (+) 933 WP_003317464.1 ABC transporter ATP-binding protein -
  N028_RS07770 (N028_07770) - 1666638..1667426 (+) 789 WP_024639310.1 ABC transporter permease -
  N028_RS07775 (N028_07775) comA 1667563..1669779 (+) 2217 WP_024639311.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N028_RS07780 (N028_07780) exbB 1669822..1670538 (+) 717 WP_080393564.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N028_RS07785 (N028_07785) - 1670535..1670966 (+) 432 WP_024639313.1 ExbD/TolR family protein -
  N028_RS07790 (N028_07790) lpxK 1670966..1671961 (+) 996 WP_024639314.1 tetraacyldisaccharide 4'-kinase -
  N028_RS07795 (N028_07795) - 1671979..1672164 (+) 186 WP_002552679.1 Trm112 family protein -
  N028_RS07800 (N028_07800) kdsB 1672161..1672925 (+) 765 WP_024639315.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N028_RS07805 (N028_07805) murB 1672960..1673979 (+) 1020 WP_024639316.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25861.36 Da        Isoelectric Point: 7.3261

>NTDB_id=397308 N028_RS07780 WP_080393564.1 1669822..1670538(+) (exbB) [Pseudomonas syringae USA011]
MVEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEQKLDSEKLKQLRAD
SPLGEILAAGLANSRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNNSGATANAGV
LAGGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=397308 N028_RS07780 WP_080393564.1 1669822..1670538(+) (exbB) [Pseudomonas syringae USA011]
ATGGTAGAGTGGCGCCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCC
GATTATTCTGAGCTCCATCGCCGCCGCCGGCATCATCATCGAGCGCCTGTGGACGTTGCGTGCCAGCCGTATCACGCCAC
CGCACCTGCTCGGGCAGGTCTGGCAGTGGATTCAGGAACAGAAGCTGGACAGCGAAAAGCTCAAGCAGCTGCGGGCTGAC
TCGCCGCTGGGCGAAATCCTTGCCGCAGGGCTGGCCAATTCCAGGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGA
AGCCGCTGCCCGGGTCATTCATGAACTGGAGCGCTACCTCAGCGCACTGGGCTCGATCGCTGCCATGGCGCCGTTGCTTG
GTTTGCTCGGCACGGTGCTGGGCATGATCGATATCTTCGGCTCGTTCAACAACTCCGGGGCCACCGCCAATGCCGGTGTG
CTGGCAGGTGGTATTTCCAAGGCGCTGATCTGTACCGCGTCGGGTCTTATCGTAGCGATCCCGGCGATTTTCTTTCATCG
CTTTCTGCAGAGCCGCGTCGATGAGCTGGTGGTCGGCATGGAACAACAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCG
ACCGCGATGTCGATCTGATCGACGCCAAGATCGATCTCAAGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

78.095

88.235

0.689

Multiple sequence alignment