Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   FOC63_RS02100 Genome accession   NZ_CP054015
Coordinates   425487..427502 (-) Length   671 a.a.
NCBI ID   WP_009854876.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain FDAARGOS_755     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 420487..432502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC63_RS02070 (FOC63_02070) - 420741..421193 (+) 453 WP_009854870.1 universal stress protein -
  FOC63_RS02075 (FOC63_02075) - 421270..422673 (-) 1404 WP_009854871.1 HAD-IIB family hydrolase -
  FOC63_RS02080 (FOC63_02080) - 422744..423706 (+) 963 WP_009854872.1 asparaginase -
  FOC63_RS02085 (FOC63_02085) - 423771..423974 (-) 204 WP_009854873.1 helix-turn-helix domain-containing protein -
  FOC63_RS02090 (FOC63_02090) - 423987..424490 (-) 504 WP_009854874.1 DUF2975 domain-containing protein -
  FOC63_RS02095 (FOC63_02095) - 424521..424988 (-) 468 WP_009854875.1 hypothetical protein -
  FOC63_RS02100 (FOC63_02100) recG/mmsA 425487..427502 (-) 2016 WP_009854876.1 ATP-dependent DNA helicase RecG Machinery gene
  FOC63_RS02105 (FOC63_02105) alr 427588..428694 (-) 1107 WP_009854877.1 alanine racemase -
  FOC63_RS02110 (FOC63_02110) acpS 428751..429110 (-) 360 WP_009854878.1 holo-ACP synthase -
  FOC63_RS02115 (FOC63_02115) - 429231..430286 (-) 1056 WP_009854879.1 3-deoxy-7-phosphoheptulonate synthase -
  FOC63_RS02120 (FOC63_02120) - 430290..431321 (-) 1032 WP_009854880.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 74626.69 Da        Isoelectric Point: 6.2243

>NTDB_id=397082 FOC63_RS02100 WP_009854876.1 425487..427502(-) (recG/mmsA) [Streptococcus gallolyticus strain FDAARGOS_755]
MNLQSSIVELKGIGAKSAEKFYKLDIYTIEDLLLYYPFRYEDFKSKRVSELADGEKAVITGTVVTPANVQYYGYKRNRLS
FKIKQGEAVIAISFFNQPYLADKVELGSDIAIFGKWDALKSAVTGMKILAQVEDDMQPVYRVAQGISQNALVKAIKSAFE
IGAQNWLPENLPQVLLDKYRLLGRAQATAAMHFPKDLAEYKQALRRIKFEELFYFQMNLQALKADNKSEANGLAIAYDEQ
KVADKIAALPFTLTGGQRRSLDDILADMRSGGHMNRLLQGDVGSGKTVVASLAMYATYTAGFQSALMVPTEILAEQHFES
LTQLFPALSIAILTSGMKTAAKQAALSAIADGSVDMIVGTHALIQDAVTYHRLGLVITDEQHRFGVNQRRVFREKGENPD
VLMMTATPIPRTLAITAFGEMDVSIIDELPAGRKPIITRWVKHEQLEVVLDWVKKELQKGAQAYVISPLIEESESLDLKN
AVALHEELSAYFADSATVALMHGRMKNDEKEAIMQDFKAQKSQVLVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLR
GRVGRGDKQSYAILVANPKTQTGKERMKIMTETTDGFVLAEADLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEARR
VASQIVSEKDWQNNPQWQIVSQNLKDKGTFD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=397082 FOC63_RS02100 WP_009854876.1 425487..427502(-) (recG/mmsA) [Streptococcus gallolyticus strain FDAARGOS_755]
ATGAATTTACAATCATCAATTGTGGAATTAAAAGGAATAGGGGCTAAGTCGGCGGAAAAATTTTATAAGTTAGATATTTA
TACCATTGAAGATTTACTGCTGTACTATCCTTTTCGATATGAAGATTTTAAGAGCAAGCGTGTTTCAGAGCTTGCTGATG
GGGAAAAAGCTGTCATTACGGGAACGGTTGTGACACCTGCAAATGTGCAATATTATGGTTATAAGCGTAATCGTCTGTCG
TTTAAAATCAAGCAGGGCGAAGCGGTTATTGCGATTTCTTTTTTTAACCAGCCTTATTTAGCAGATAAAGTCGAACTTGG
CAGCGATATTGCGATTTTTGGAAAATGGGATGCCCTAAAATCAGCGGTGACTGGTATGAAAATTTTAGCGCAAGTTGAAG
ATGATATGCAGCCAGTTTACCGTGTTGCTCAAGGTATTTCACAAAATGCACTGGTCAAAGCTATCAAATCAGCTTTTGAA
ATTGGTGCTCAGAATTGGTTGCCTGAAAATTTACCGCAGGTGCTTTTGGACAAGTATCGTTTGTTAGGGCGTGCTCAAGC
AACGGCTGCTATGCACTTTCCGAAAGATTTAGCAGAGTATAAACAAGCACTTCGTCGGATAAAATTTGAAGAACTGTTCT
ATTTCCAAATGAATTTGCAAGCTTTAAAGGCAGACAATAAATCAGAAGCTAATGGTTTGGCGATTGCTTATGATGAACAA
AAAGTTGCTGATAAGATTGCAGCTCTGCCATTTACCTTAACGGGTGGTCAAAGGCGGAGTCTTGATGATATTTTGGCGGA
TATGCGTTCTGGTGGTCATATGAATCGTCTCTTGCAAGGGGACGTTGGTTCTGGTAAGACGGTTGTGGCTAGTCTTGCCA
TGTATGCTACTTATACGGCAGGTTTTCAATCAGCTTTGATGGTGCCAACGGAAATTTTGGCGGAGCAGCATTTTGAAAGT
TTGACCCAGCTTTTTCCAGCTTTGTCCATTGCAATTTTAACATCAGGGATGAAAACAGCAGCCAAACAAGCGGCACTTTC
GGCGATTGCGGATGGTTCGGTAGATATGATTGTTGGTACGCATGCGCTGATTCAAGATGCGGTAACTTACCACCGCTTGG
GGCTTGTCATTACTGATGAACAACACCGTTTTGGTGTCAATCAACGTCGTGTTTTCCGTGAAAAGGGCGAAAATCCAGAT
GTGCTCATGATGACTGCGACACCAATTCCACGGACACTTGCTATTACGGCATTTGGTGAAATGGACGTTTCGATTATTGA
TGAATTGCCTGCAGGACGCAAACCGATTATCACGCGTTGGGTTAAACATGAACAGTTGGAAGTTGTGCTTGATTGGGTCA
AAAAAGAATTGCAAAAAGGGGCACAAGCCTATGTGATTTCACCTTTAATTGAAGAATCTGAATCACTTGATTTGAAAAAT
GCTGTTGCCTTGCACGAGGAATTGTCAGCCTATTTTGCGGATAGTGCAACCGTAGCGCTCATGCATGGTCGCATGAAAAA
TGACGAAAAAGAAGCTATCATGCAAGATTTCAAGGCACAAAAAAGTCAGGTTTTGGTATCGACAACCGTCATTGAAGTTG
GTGTTAATGTCCCAAATGCGACTATTATGATTATTATGGATGCTGACCGATTTGGGCTTAGCCAGTTACATCAGCTTCGC
GGACGAGTTGGGCGTGGAGATAAACAATCTTATGCTATTTTAGTCGCAAATCCTAAAACACAAACAGGAAAAGAGCGCAT
GAAAATTATGACAGAAACAACGGATGGTTTTGTTTTAGCAGAAGCCGACCTTAAAATGCGTGGTTCAGGTGAGATTTTCG
GCACACGCCAATCAGGAATTCCAGAATTCCAAGTGGCAGATATTGTCGAAGATTACAATATTCTCGAGGAAGCTAGACGC
GTTGCAAGTCAGATTGTTTCCGAAAAAGATTGGCAAAACAATCCACAATGGCAAATTGTTAGCCAAAATCTCAAAGACAA
AGGAACTTTTGATTAA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-666)

RecG wedge domain (RecG_wedge)

(10-157)

DEAD/DEAH box helicase (DEAD)

(257-409)

Helicase conserved C-terminal domain (Helicase_C)

(450-566)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

70.641

100

0.706
  recG/mmsA Streptococcus pneumoniae R36A

70.641

100

0.706
  recG Bacillus subtilis subsp. subtilis str. 168

49.48

100

0.496
  recG Neisseria meningitidis strain C311

39.098

99.106

0.387