Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG/cglG   Type   Machinery gene
Locus tag   FOC71_RS00715 Genome accession   NZ_CP053999
Coordinates   141783..142109 (-) Length   108 a.a.
NCBI ID   WP_268928556.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_769     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 136783..147109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC71_RS00700 (FOC71_00700) glmS 137297..139111 (-) 1815 WP_003073998.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  FOC71_RS00705 (FOC71_00705) - 139493..140692 (-) 1200 WP_003073996.1 acetate kinase -
  FOC71_RS00710 (FOC71_00710) comGH 140739..141692 (-) 954 WP_003073994.1 class I SAM-dependent methyltransferase Machinery gene
  FOC71_RS00715 (FOC71_00715) comGG/cglG 141783..142109 (-) 327 WP_268928556.1 competence type IV pilus minor pilin ComGG Machinery gene
  FOC71_RS00720 (FOC71_00720) comGF/cglF 142090..142527 (-) 438 WP_003073990.1 competence type IV pilus minor pilin ComGF Machinery gene
  FOC71_RS00725 (FOC71_00725) comGE/cglE 142511..142804 (-) 294 WP_003073987.1 competence type IV pilus minor pilin ComGE Machinery gene
  FOC71_RS00730 (FOC71_00730) comGD 142776..143174 (-) 399 WP_260469249.1 competence type IV pilus minor pilin ComGD Machinery gene
  FOC71_RS00735 (FOC71_00735) comGC 143164..143481 (-) 318 WP_003073983.1 competence type IV pilus major pilin ComGC Machinery gene
  FOC71_RS00740 (FOC71_00740) comGB 143478..144500 (-) 1023 WP_172851983.1 competence type IV pilus assembly protein ComGB Machinery gene
  FOC71_RS00745 (FOC71_00745) comGA 144442..145383 (-) 942 WP_003073980.1 competence type IV pilus ATPase ComGA Machinery gene
  FOC71_RS00750 (FOC71_00750) - 145452..145817 (-) 366 WP_003073978.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12899.89 Da        Isoelectric Point: 10.8456

>NTDB_id=396969 FOC71_RS00715 WP_268928556.1 141783..142109(-) (comGG/cglG) [Streptococcus intermedius strain FDAARGOS_769]
MWKQKVKAGIMLHALFMTAVFSLLLQFYLHRQTASHRNFTLNRERLQAYAMAVIANKDSRHREFDKGHVQEQQGEKELTL
TVTMKTGRHYQFRFPFEKTKLTNDNRDK

Nucleotide


Download         Length: 327 bp        

>NTDB_id=396969 FOC71_RS00715 WP_268928556.1 141783..142109(-) (comGG/cglG) [Streptococcus intermedius strain FDAARGOS_769]
GTGTGGAAACAAAAAGTTAAAGCAGGTATTATGCTCCATGCCCTTTTTATGACAGCTGTCTTTAGCTTGCTTTTGCAATT
TTATCTTCATCGTCAGACCGCTAGTCATAGAAATTTTACTCTAAATCGAGAACGACTACAGGCGTATGCAATGGCAGTTA
TCGCAAACAAAGATTCTAGACACAGAGAATTTGATAAAGGACATGTCCAAGAGCAACAAGGTGAGAAAGAGCTCACCCTG
ACAGTAACAATGAAGACGGGTCGCCATTATCAATTTCGTTTTCCGTTTGAGAAGACCAAACTAACCAATGACAATCGAGA
CAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus mitis NCTC 12261

46.535

93.519

0.435
  comGG/cglG Streptococcus pneumoniae Rx1

44.118

94.444

0.417
  comGG/cglG Streptococcus pneumoniae D39

44.118

94.444

0.417
  comGG/cglG Streptococcus pneumoniae R6

44.118

94.444

0.417
  comGG/cglG Streptococcus pneumoniae TIGR4

44.118

94.444

0.417
  comGG/cglG Streptococcus mitis SK321

42.574

93.519

0.398
  comGG Streptococcus mutans UA159

38.614

93.519

0.361
  comGG Streptococcus mutans UA140

38.614

93.519

0.361