Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   GH769_RS13295 Genome accession   NZ_CP045767
Coordinates   3004708..3006933 (-) Length   741 a.a.
NCBI ID   WP_256670321.1    Uniprot ID   -
Organism   Pseudomonas sp. CFSAN084952     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2999708..3011933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GH769_RS13260 (GH769_13260) murB 3000078..3001097 (-) 1020 WP_032902861.1 UDP-N-acetylmuramate dehydrogenase -
  GH769_RS13265 (GH769_13265) - 3001094..3001558 (-) 465 WP_014718874.1 low molecular weight protein-tyrosine-phosphatase -
  GH769_RS13270 (GH769_13270) kdsB 3001558..3002322 (-) 765 WP_032902860.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GH769_RS13275 (GH769_13275) - 3002319..3002504 (-) 186 WP_003174668.1 Trm112 family protein -
  GH769_RS13280 (GH769_13280) lpxK 3002529..3003539 (-) 1011 WP_032902859.1 tetraacyldisaccharide 4'-kinase -
  GH769_RS13285 (GH769_13285) - 3003539..3003967 (-) 429 WP_153649780.1 biopolymer transporter ExbD -
  GH769_RS13290 (GH769_13290) exbB 3003964..3004599 (-) 636 WP_003192043.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  GH769_RS13295 (GH769_13295) comA 3004708..3006933 (-) 2226 WP_256670321.1 ComEC/Rec2 family competence protein Machinery gene
  GH769_RS13300 (GH769_13300) - 3007069..3007584 (+) 516 WP_003192045.1 DUF2062 domain-containing protein -
  GH769_RS13305 (GH769_13305) - 3007588..3008946 (-) 1359 WP_032902857.1 sensor histidine kinase -
  GH769_RS13310 (GH769_13310) - 3008933..3009661 (-) 729 WP_032902855.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80493.64 Da        Isoelectric Point: 10.6397

>NTDB_id=396944 GH769_RS13295 WP_256670321.1 3004708..3006933(-) (comA) [Pseudomonas sp. CFSAN084952]
MKTGMLALALGLLTLRWLPALPPGTVLLAMLVLALMLLPFRSYPLAFFLVGLSWACFSAQRALDDRLQPALDGQTRWVEG
RVVGLPQQMGTGVRFELADGRLRKGRLPKRIRVSWHGGPVVNSGERWRLALTLKRPAGLLNFHGVDHEAWLLAQRIGATA
TVKDGERLAPARNAWRDAVRQRVMAVDAQGREAGLAALVLGDGSGLAPEDWQVLQDTGTVHLLVISGQHIGLLAGLIYGF
VAVLARYGCWPRTWPWLPWACGLAFGAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGLWWPLLLALNGVLVLEPL
ASLQVGFWLSFAAVAVLLLAFGGRLGPWSVWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPVANLFAVPWISLVVLPLAL
LGTALLWVPLAGEGVLWLAGGALDGLFKGLALLAGQLPAWVPPEVPLGYWLVSLMGAVVLLLPKGVPFRVLGWPMLLMAV
FPPREWVPHGQVEVLQLDVGQGQALILRTRHHTLLYDAGPRSGPVDLGARVVLPSLKKRGVGQLDMMLLSHADADHAGGA
AAVARGLPVKRVVGGETEGLPAFLATQPCTSGERWEWDGVWFELWQWAGGLEGNPRSCVLHVQANGERLLLTGDIDRAAE
QAFLASPLAVPTDWLQAPHHGSRSSSSWPFVQRLAPTSVLISRGRSNTFGHPHPQVLERYQALGSRVYDSAEQGAVRLRL
GAFVPATVARSERRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=396944 GH769_RS13295 WP_256670321.1 3004708..3006933(-) (comA) [Pseudomonas sp. CFSAN084952]
ATGAAGACAGGGATGTTGGCGTTGGCGCTGGGGTTGCTGACGTTGCGTTGGTTGCCGGCCCTGCCGCCCGGCACCGTGCT
ATTGGCCATGCTGGTGCTGGCCTTGATGCTGTTGCCTTTTCGGTCCTATCCCTTGGCCTTCTTCCTGGTGGGGTTGAGCT
GGGCTTGCTTCAGCGCGCAGCGGGCGTTGGATGATCGACTGCAGCCGGCCCTGGACGGGCAGACTCGCTGGGTGGAGGGG
CGTGTGGTCGGCTTGCCCCAGCAGATGGGTACGGGCGTGCGCTTTGAACTGGCCGACGGCCGGTTGCGCAAGGGGCGGCT
GCCCAAGCGTATCCGCGTGTCCTGGCACGGCGGGCCAGTGGTGAACAGCGGCGAGCGCTGGCGCCTGGCGCTGACACTCA
AGCGGCCTGCGGGCCTGCTCAATTTTCATGGAGTTGACCACGAAGCCTGGCTGCTGGCCCAGCGTATCGGTGCCACTGCA
ACGGTGAAAGACGGTGAACGTCTCGCACCGGCCCGCAATGCCTGGCGCGATGCTGTTCGCCAGCGCGTGATGGCGGTGGA
TGCCCAAGGCCGCGAGGCGGGCTTGGCGGCGTTGGTATTGGGCGACGGTTCCGGCTTGGCGCCTGAGGATTGGCAGGTGT
TGCAGGACACGGGCACGGTGCATCTGCTGGTGATTTCCGGGCAGCATATCGGCTTGTTGGCGGGCTTGATCTACGGCTTT
GTCGCGGTATTGGCGCGCTATGGTTGCTGGCCACGAACCTGGCCGTGGCTGCCGTGGGCGTGCGGCCTGGCTTTTGGCGC
AGCGTTGGGTTATGGCCTGCTGGCGGGGTTTGGTGTGCCGGTGCAGCGGGCCTGTGTGATGGTCGGCCTGGTGTTGCTGT
GGCGTCTGCGTTTCCGCCATTTGGGGCTGTGGTGGCCATTGCTGCTGGCGCTGAACGGCGTGCTGGTACTGGAGCCTTTG
GCCAGCCTGCAGGTAGGGTTCTGGTTGTCGTTTGCGGCGGTCGCGGTGTTGTTGCTGGCGTTCGGCGGGCGCCTGGGGCC
ATGGAGCGTCTGGCAGGCGTGGACCCGGCCTCAGTGGTTGATTGCCATTGGCTTGTTTCCGGTGTTGCTGGTGCTGGGTC
TGCCCATCAGCCTCAGCGCACCGGTGGCCAATCTGTTTGCCGTGCCGTGGATCAGCCTGGTGGTGTTGCCCTTGGCGCTG
CTGGGCACGGCGTTGTTGTGGGTACCGCTGGCGGGAGAAGGTGTGCTGTGGCTGGCCGGCGGCGCGCTGGACGGATTGTT
CAAGGGCCTGGCGCTGCTGGCCGGGCAATTGCCGGCCTGGGTGCCGCCCGAGGTGCCGCTGGGGTATTGGCTGGTCAGCC
TGATGGGCGCGGTGGTGTTACTGCTGCCCAAAGGGGTGCCGTTCCGGGTGTTGGGCTGGCCCATGCTGTTGATGGCCGTT
TTTCCGCCCCGGGAGTGGGTGCCCCACGGACAGGTAGAGGTGCTGCAACTGGATGTCGGCCAGGGGCAGGCACTGATCCT
GCGCACCCGTCATCACACCTTGCTCTACGATGCCGGGCCGCGCTCGGGGCCTGTCGACCTCGGCGCGCGCGTCGTGTTGC
CGTCGTTGAAAAAACGCGGGGTAGGGCAGTTGGACATGATGCTGCTCAGCCATGCCGACGCCGATCACGCCGGTGGTGCG
GCAGCAGTGGCTCGGGGGCTGCCCGTCAAACGCGTGGTGGGCGGCGAAACCGAGGGCTTGCCAGCCTTTCTCGCCACCCA
GCCCTGTACCAGCGGCGAGCGATGGGAATGGGACGGGGTGTGGTTTGAACTGTGGCAGTGGGCGGGTGGGCTTGAGGGCA
ATCCGAGGTCGTGCGTGCTGCACGTCCAGGCCAATGGCGAACGCCTGCTGCTCACCGGCGACATTGACCGCGCTGCAGAA
CAGGCGTTTCTAGCTTCCCCGCTGGCGGTTCCGACCGACTGGCTGCAGGCCCCGCACCATGGCAGCCGAAGTTCTTCGTC
CTGGCCTTTCGTACAACGGTTGGCGCCCACCTCTGTGCTGATTTCCCGCGGTCGCAGCAATACGTTTGGCCATCCTCATC
CGCAGGTCCTCGAACGCTACCAAGCACTGGGCAGCCGGGTGTATGACAGCGCCGAACAGGGCGCTGTGCGCCTGCGCCTG
GGGGCGTTTGTGCCTGCGACGGTTGCGCGCAGCGAACGTCGTTTCTGGCGCGAACCGTTACCGTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-664)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.524

96.356

0.574
  comA Ralstonia pseudosolanacearum GMI1000

34.34

100

0.368

Multiple sequence alignment