Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   GH769_RS13290 Genome accession   NZ_CP045767
Coordinates   3003964..3004599 (-) Length   211 a.a.
NCBI ID   WP_003192043.1    Uniprot ID   A0A0W0N0T4
Organism   Pseudomonas sp. CFSAN084952     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2998964..3009599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GH769_RS13255 (GH769_13255) - 2999337..3000008 (+) 672 WP_003192030.1 Bax inhibitor-1/YccA family protein -
  GH769_RS13260 (GH769_13260) murB 3000078..3001097 (-) 1020 WP_032902861.1 UDP-N-acetylmuramate dehydrogenase -
  GH769_RS13265 (GH769_13265) - 3001094..3001558 (-) 465 WP_014718874.1 low molecular weight protein-tyrosine-phosphatase -
  GH769_RS13270 (GH769_13270) kdsB 3001558..3002322 (-) 765 WP_032902860.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GH769_RS13275 (GH769_13275) - 3002319..3002504 (-) 186 WP_003174668.1 Trm112 family protein -
  GH769_RS13280 (GH769_13280) lpxK 3002529..3003539 (-) 1011 WP_032902859.1 tetraacyldisaccharide 4'-kinase -
  GH769_RS13285 (GH769_13285) - 3003539..3003967 (-) 429 WP_153649780.1 biopolymer transporter ExbD -
  GH769_RS13290 (GH769_13290) exbB 3003964..3004599 (-) 636 WP_003192043.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  GH769_RS13295 (GH769_13295) comA 3004708..3006933 (-) 2226 WP_256670321.1 ComEC/Rec2 family competence protein Machinery gene
  GH769_RS13300 (GH769_13300) - 3007069..3007584 (+) 516 WP_003192045.1 DUF2062 domain-containing protein -
  GH769_RS13305 (GH769_13305) - 3007588..3008946 (-) 1359 WP_032902857.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22910.04 Da        Isoelectric Point: 7.3615

>NTDB_id=396943 GH769_RS13290 WP_003192043.1 3003964..3004599(-) (exbB) [Pseudomonas sp. CFSAN084952]
MWELVKSGGWMMLPIILSSIVALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=396943 GH769_RS13290 WP_003192043.1 3003964..3004599(-) (exbB) [Pseudomonas sp. CFSAN084952]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGTCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCACTTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAGCAAAAGCTCAAAGAGCTGCGTGCCAATTCGCCACTGGGTGAAATCCTCGCCGCCGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCGGCCGCCCGGGTTATTCATGAACTGGAGCGCTACAT
CAACGCCCTCGGCACTATCGCCGCCATGGCGCCGTTGCTCGGTTTGCTCGGCACGGTCCTGGGCATGATCGATATCTTCA
GCGCGTTCACGGGCTCGGGCATGACCACCAACGCGTCGGTATTGGCCGGGGGCATTTCCAAGGCCCTGATCACTACTGCT
GCGGGCTTGATGGTGGGTATCCCTTCGGTGTTTTTCCACCGTTTCCTGCAGCGGCGCATTGATGAGCTGGTGGTCGGTAT
GGAACAGGAAGCCATCAAGCTGGTAGAAGTGGTGCAGGGCGACCGTGATGTAGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0N0T4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858

Multiple sequence alignment