Detailed information NTG0396937

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GH769_RS00805
• Genome accession: NZ_CP045767
• Coordinates: 162361..163227 (-)
• Length: 288 a.a.
• NCBI ID: WP_032903993.1
• Uniprot ID: -
• Organism: Pseudomonas sp. CFSAN084952
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 157361..168227

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GH769_RS00770 (GH769_00770)	-	158232..159530 (-)	1299	WP_032903990.1	NAD(P)/FAD-dependent oxidoreductase	-
GH769_RS00775 (GH769_00775)	-	159591..159764 (-)	174	WP_014716869.1	DUF3094 family protein	-
GH769_RS00780 (GH769_00780)	-	159819..160448 (-)	630	WP_003188431.1	DUF1780 domain-containing protein	-
GH769_RS00785 (GH769_00785)	-	160578..161267 (+)	690	WP_032903991.1	energy-coupling factor ABC transporter permease	-
GH769_RS00790 (GH769_00790)	-	161332..161547 (+)	216	WP_003171680.1	hypothetical protein	-
GH769_RS00795 (GH769_00795)	yacG	161544..161744 (-)	201	WP_003188437.1	DNA gyrase inhibitor YacG	-
GH769_RS00800 (GH769_00800)	coaE	161741..162364 (-)	624	WP_032903992.1	dephospho-CoA kinase	-
GH769_RS00805 (GH769_00805)	pilD	162361..163227 (-)	867	WP_032903993.1	A24 family peptidase	Machinery gene
GH769_RS00810 (GH769_00810)	pilC	163224..164432 (-)	1209	WP_032903994.1	type II secretion system F family protein	Machinery gene
GH769_RS00815 (GH769_00815)	-	164634..165047 (+)	414	WP_014716874.1	pilin	-
GH769_RS00825 (GH769_00825)	-	165337..165642 (+)	306	WP_014716875.1	DUF6388 family protein	-
GH769_RS00830 (GH769_00830)	nadC	165692..166540 (-)	849	WP_014716876.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31779.01 Da
• Isoelectric Point: 7.0537

>NTDB_id=396937 GH769_RS00805 WP_032903993.1 162361..163227(-) (pilD) [Pseudomonas sp. CFSAN084952]
MSLLLSEHPWAFVGLALVLGLIVGSFLNVLAWRLPKMLEREWRAQAHEILDLPAEPGGPAYNLMRPNSCCPRCDQPIRPW
ENIPVLSYLLLRGHCAHCREPIGLRYPLTELACALISTAVAWHFGFGWQAGAVMLLSWGLLGMSLIDLDHQLLPDVLVLP
LLWLGLILNSADLLTPLPDAVWGAVIGYMSLWCLFWLFKMATGRDGMGHGDFKLLALLGAWGGWQILPMTLLMASLLGVL
AGLILLRLRKAQVSAPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=396937 GH769_RS00805 WP_032903993.1 162361..163227(-) (pilD) [Pseudomonas sp. CFSAN084952]
TTGAGCCTGCTGCTGAGCGAACATCCCTGGGCGTTTGTTGGCCTGGCGCTGGTGTTGGGCCTGATCGTCGGTAGCTTCCT
CAATGTGCTGGCGTGGCGCCTGCCCAAAATGCTCGAGCGGGAATGGCGTGCACAGGCCCATGAGATTCTCGACTTGCCAG
CCGAGCCCGGTGGGCCGGCCTATAACCTGATGCGTCCGAACTCCTGCTGCCCGCGCTGCGATCAACCGATTCGGCCTTGG
GAAAATATCCCGGTGCTCAGCTACCTGTTGCTCCGGGGGCATTGTGCCCACTGCCGTGAGCCCATCGGCCTGCGTTACCC
CCTCACCGAACTCGCGTGCGCGCTGATCTCAACCGCTGTCGCCTGGCACTTCGGCTTCGGCTGGCAAGCCGGCGCGGTGA
TGCTGTTGAGTTGGGGCTTGCTGGGCATGAGCCTGATTGATCTGGACCACCAACTGCTGCCGGATGTGCTGGTGCTGCCG
CTGCTATGGCTGGGGCTGATCCTCAACAGTGCTGACCTGTTGACGCCACTGCCCGATGCAGTGTGGGGCGCGGTTATCGG
CTACATGAGCTTGTGGTGCCTGTTCTGGCTGTTCAAGATGGCCACCGGCAGAGACGGCATGGGCCATGGCGACTTCAAGT
TATTGGCCTTGCTGGGAGCCTGGGGCGGCTGGCAGATTCTGCCGATGACCCTGCTGATGGCCTCGCTGCTGGGCGTGCTT
GCCGGGCTGATCCTGCTGCGTTTGCGTAAGGCCCAGGTGTCAGCGCCGATGCCGTTTGGCCCCTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.943	98.264	0.51
pilD	Vibrio campbellii strain DS40M4	49.296	98.611	0.486
pilD	Neisseria gonorrhoeae MS11	49.259	93.75	0.462
pilD	Acinetobacter baumannii D1279779	47.619	94.792	0.451
pilD	Acinetobacter nosocomialis M2	46.886	94.792	0.444