Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   VVMO6_RS23355 Genome accession   NC_014965
Coordinates   3060305..3061015 (+) Length   236 a.a.
NCBI ID   WP_044023954.1    Uniprot ID   -
Organism   Vibrio vulnificus MO6-24/O     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3055305..3066015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VVMO6_RS14255 (VVM_04434) greB 3055716..3056198 (-) 483 WP_013572566.1 transcription elongation factor GreB -
  VVMO6_RS14260 (VVM_04435) - 3056434..3058758 (+) 2325 WP_013572567.1 Tex family protein -
  VVMO6_RS14265 (VVM_04436) - 3058841..3059311 (-) 471 WP_011078928.1 hypothetical protein -
  VVMO6_RS14270 (VVM_04437) bioH 3059449..3060216 (-) 768 WP_013572568.1 pimeloyl-ACP methyl ester esterase BioH -
  VVMO6_RS23355 comF 3060305..3061015 (+) 711 WP_044023954.1 ComF family protein Machinery gene
  VVMO6_RS14280 (VVM_04440) nfuA 3061146..3061730 (+) 585 WP_026050270.1 Fe-S biogenesis protein NfuA -
  VVMO6_RS14285 (VVM_04441) nudE 3061846..3062400 (+) 555 WP_013572571.1 ADP compounds hydrolase NudE -
  VVMO6_RS14290 (VVM_04442) cysQ 3062415..3063242 (+) 828 WP_011149213.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  VVMO6_RS14295 (VVM_04443) - 3063347..3064108 (-) 762 WP_011078934.1 type II secretion system protein N -
  VVMO6_RS14300 (VVM_04444) - 3064110..3064601 (-) 492 WP_011078935.1 type II secretion system protein M -
  VVMO6_RS14305 (VVM_04445) gspL 3064609..3065808 (-) 1200 WP_013572572.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27261.06 Da        Isoelectric Point: 9.7910

>NTDB_id=39692 VVMO6_RS23355 WP_044023954.1 3060305..3061015(+) (comF) [Vibrio vulnificus MO6-24/O]
MLTDWLSEKILRSLPRLCHLCGLPMNHDHHPLWCLHCLTLFDAEPRCQRCGLPTLTVVPQCGQCLKSPPPWQRLYCLTPY
RFPASHYVNQIKHQRKFWYCASLAPLLIQRIDRPAPLLLSVPMHWRRQWLRGFNQSDVLAAQLARRLNRPFLAHAFTRLL
HTPPQQGLNKQQRQRNLAGAFRLNRSALPYAIPKHVAIVDDVVTTGSTVRQLCQLLLAVGVESIDIYCLCRTPEKD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=39692 VVMO6_RS23355 WP_044023954.1 3060305..3061015(+) (comF) [Vibrio vulnificus MO6-24/O]
ATGTTAACCGATTGGCTTAGTGAAAAAATACTCCGATCTCTTCCTCGCCTCTGTCATCTGTGCGGCTTGCCGATGAATCA
CGACCATCACCCGCTTTGGTGCCTGCACTGCCTAACCCTGTTCGATGCCGAACCGCGTTGCCAACGTTGCGGGCTGCCGA
CGTTAACGGTTGTCCCCCAGTGCGGCCAATGTCTGAAATCTCCGCCCCCTTGGCAAAGGCTCTACTGCCTCACGCCCTAT
CGCTTCCCGGCCTCACACTACGTCAATCAGATCAAACATCAGCGCAAGTTCTGGTACTGCGCCAGCTTGGCTCCTTTGCT
CATCCAACGCATTGACCGCCCCGCGCCACTGCTGCTCTCTGTGCCGATGCATTGGCGTCGGCAATGGCTACGAGGCTTCA
ATCAAAGCGATGTGTTGGCGGCGCAACTGGCCCGTAGATTAAATCGCCCCTTCCTTGCTCACGCGTTTACTCGTTTATTG
CACACTCCGCCACAGCAAGGGCTCAATAAACAGCAGCGTCAGCGCAACTTAGCGGGGGCCTTTCGCCTCAATCGCTCGGC
TTTACCCTATGCGATTCCCAAGCACGTCGCGATTGTCGATGATGTGGTCACGACGGGCAGTACGGTACGACAATTATGTC
AATTACTGCTTGCAGTCGGCGTGGAAAGCATTGATATTTATTGCCTCTGCCGAACTCCCGAGAAGGATTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.41

99.153

0.559
  comF Vibrio campbellii strain DS40M4

46.667

100

0.475

Multiple sequence alignment