Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   STH8232_RS07210 Genome accession   NC_017581
Coordinates   1397528..1399498 (-) Length   656 a.a.
NCBI ID   WP_014621804.1    Uniprot ID   -
Organism   Streptococcus thermophilus JIM 8232     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1392528..1404498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STH8232_RS07200 (STH8232_1668) amiA 1393910..1395877 (-) 1968 WP_014621802.1 peptide ABC transporter substrate-binding protein Regulator
  STH8232_RS07205 (STH8232_1670) - 1396233..1397483 (+) 1251 Protein_1339 ISL3 family transposase -
  STH8232_RS07210 (STH8232_1671) amiA3 1397528..1399498 (-) 1971 WP_014621804.1 peptide ABC transporter substrate-binding protein Regulator
  STH8232_RS10765 - 1399757..1399959 (-) 203 Protein_1341 IS3 family transposase -
  STH8232_RS11955 - 1399953..1400363 (-) 411 Protein_1342 ATP-binding cassette domain-containing protein -
  STH8232_RS07225 (STH8232_1675) - 1400395..1400709 (-) 315 Protein_1343 TatD family hydrolase -
  STH8232_RS07230 (STH8232_1676) - 1401055..1402260 (+) 1206 WP_014621806.1 OFA family MFS transporter -
  STH8232_RS10770 - 1402306..1403619 (-) 1314 Protein_1345 IS3 family transposase -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72323.50 Da        Isoelectric Point: 5.3772

>NTDB_id=39667 STH8232_RS07210 WP_014621804.1 1397528..1399498(-) (amiA3) [Streptococcus thermophilus JIM 8232]
MKKSKWLALAGVALLGVGVLAACSSKSNTSGTTYGYVYSSDPETLDYITSNTGPTKSVVTNGVDGLMEADKYGNLVPSVA
EDWSVSKDGLTYTYKIRKGIKWYTSEGEEYANVTAKDFVTGLKHAADSKAGGIYLVQDSIAGLSDYLSGTNKDFSNVGVK
AIDDYTLQYTLKQPEPYWNSKTTYSLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELVKNEHYWDKK
NVHFDAIKFSYYDGSDQDALVRGFTDGAYNFARVFPTSSNYASVEKKYKDNIFYTEPGASTSAIGINIDRQSYKYTAKKT
DSEKSSTKKALLNKDFRQAINFAIDRKAYQSQINGKDGATLAVRNLFVPSDFVSAGDKTFGDLVTEKMSSYGDEWSGVNF
ADSQDGLYNAEKAKTEFAKAKDALKADGVQFPIHLDLPVDQSSKLNVAQAQSLKQTIEKSLGKDNVVIDINQLSSDDLQN
ATLNAANAAAEDWDISNGVIWAPDYQDPSTYLDIFKTTSSENTKTFMGYDDPNNAAAVQVGLKDYDALLNSAASETSDLN
VRYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLKPFTGASIQVGDKNSSDYLKYVKPQEKVVTKKEYEQSREKWLKEK
KESNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=39667 STH8232_RS07210 WP_014621804.1 1397528..1399498(-) (amiA3) [Streptococcus thermophilus JIM 8232]
ATGAAAAAAAGCAAATGGTTGGCCCTCGCGGGTGTAGCACTTCTAGGTGTTGGTGTGTTAGCGGCTTGTTCATCTAAATC
AAACACTAGCGGAACTACTTATGGTTACGTTTACAGTTCGGATCCAGAAACTTTGGATTATATTACATCAAATACGGGAC
CTACAAAATCTGTTGTGACAAATGGTGTAGATGGACTTATGGAAGCGGACAAATATGGTAATCTTGTTCCATCAGTAGCT
GAAGACTGGTCTGTGTCTAAAGATGGTCTTACTTATACCTATAAAATTCGTAAAGGGATCAAATGGTATACTTCTGAAGG
TGAAGAGTACGCTAATGTTACTGCTAAGGACTTTGTAACGGGTCTTAAACATGCTGCGGATTCCAAAGCAGGTGGTATCT
ATTTGGTTCAAGATTCTATTGCTGGATTGTCTGACTATCTCTCTGGTACCAATAAAGATTTCTCGAATGTGGGTGTCAAG
GCAATTGATGACTATACTTTGCAGTACACGCTTAAGCAACCAGAACCATACTGGAACTCTAAGACAACTTATAGTTTGCT
TTTCCCAGTAAATGAAGACTTCCTCAAGAATAAGGGAAAAGATTTTGGTAAATCAACAGACCCAACCTCTATCCTTTATA
ATGGACCTTTCCTTCTCAAATCTTTGACAGCTAAATCTTCAATTGAGTTGGTTAAGAATGAACATTATTGGGACAAGAAA
AATGTACACTTTGATGCCATCAAATTCTCATATTATGATGGTTCGGATCAAGATGCTCTAGTACGTGGTTTCACTGATGG
TGCTTATAATTTTGCTCGTGTCTTTCCAACAAGTTCAAACTATGCTTCTGTAGAAAAAAAATATAAAGATAATATTTTTT
ACACAGAACCAGGTGCATCTACATCAGCTATTGGTATTAATATTGACCGTCAAAGTTACAAGTATACAGCCAAAAAGACG
GATTCTGAAAAATCATCAACCAAGAAAGCCCTTCTAAACAAGGATTTCCGTCAAGCAATTAACTTTGCCATTGACCGTAA
GGCCTATCAATCACAAATTAACGGTAAAGATGGTGCAACTCTAGCTGTTCGTAACCTCTTTGTGCCTTCTGATTTTGTGA
GTGCAGGTGATAAGACCTTCGGAGATCTTGTAACAGAGAAAATGTCTTCATATGGGGATGAATGGTCAGGTGTGAATTTT
GCTGATAGTCAAGATGGCCTCTACAATGCTGAAAAAGCTAAGACTGAGTTTGCCAAAGCTAAGGATGCTCTCAAAGCAGA
TGGTGTTCAATTCCCAATTCATTTGGACCTTCCAGTTGACCAAAGTTCTAAACTTAATGTTGCCCAAGCCCAATCTTTGA
AACAAACCATTGAAAAATCATTGGGAAAGGACAATGTGGTGATTGATATTAACCAATTGTCATCTGATGATTTGCAAAAT
GCAACCCTTAATGCCGCCAACGCAGCAGCAGAAGACTGGGATATTTCAAATGGTGTCATTTGGGCGCCAGATTACCAAGA
TCCATCAACCTACCTTGATATCTTTAAGACAACTTCAAGTGAAAACACTAAGACTTTCATGGGTTATGATGATCCAAATA
ATGCGGCAGCAGTCCAAGTAGGACTCAAAGACTATGATGCCTTGCTTAATTCTGCAGCTTCAGAAACAAGTGACCTTAAT
GTTCGTTATGATCGTTATGCTCAAGCTCAAGCATGGTTGGAGGACAGTTCGCTTGTGATTCCATTGACTGTTGGTAATGG
TGCGGCACCAGTTATCTCACGCTTGAAACCGTTTACCGGTGCTAGCATCCAGGTGGGTGATAAAAACTCATCAGACTACT
TAAAATATGTGAAACCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAAAAG
AAAGAATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterProScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

97.412

100

0.976
  amiA3 Streptococcus thermophilus LMG 18311

97.26

100

0.974
  amiA Streptococcus salivarius strain HSISS4

91.159

100

0.912