Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LG045_RS07665 Genome accession   NZ_CP045729
Coordinates   1510480..1512240 (-) Length   586 a.a.
NCBI ID   WP_056937728.1    Uniprot ID   -
Organism   Limosilactobacillus gastricus strain LG045     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1505480..1517240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG045_RS07640 (LG045_07640) gltX 1505782..1507281 (-) 1500 WP_056937701.1 glutamate--tRNA ligase -
  LG045_RS07645 (LG045_07645) radA 1507356..1508729 (-) 1374 WP_056937702.1 DNA repair protein RadA Machinery gene
  LG045_RS07650 (LG045_07650) - 1508745..1509280 (-) 536 Protein_1491 dUTP diphosphatase -
  LG045_RS07655 (LG045_07655) - 1509423..1509713 (+) 291 WP_056937704.1 GNAT family N-acetyltransferase -
  LG045_RS07660 (LG045_07660) rpiA 1509730..1510419 (+) 690 WP_056937705.1 ribose-5-phosphate isomerase RpiA -
  LG045_RS07665 (LG045_07665) rcrQ 1510480..1512240 (-) 1761 WP_056937728.1 ABC transporter ATP-binding protein Regulator
  LG045_RS07670 (LG045_07670) rcrP 1512261..1514015 (-) 1755 WP_056937706.1 ABC transporter ATP-binding protein Regulator
  LG045_RS07675 (LG045_07675) - 1514036..1514467 (-) 432 WP_056937707.1 MarR family winged helix-turn-helix transcriptional regulator -
  LG045_RS07680 (LG045_07680) - 1514583..1515134 (-) 552 WP_056937708.1 hypothetical protein -
  LG045_RS07685 (LG045_07685) - 1515135..1516469 (-) 1335 WP_056937709.1 aminopeptidase C -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 65114.20 Da        Isoelectric Point: 5.1943

>NTDB_id=396419 LG045_RS07665 WP_056937728.1 1510480..1512240(-) (rcrQ) [Limosilactobacillus gastricus strain LG045]
MSVREKSTEKFSLAGIARYFKPYTVMLIIAALLSIVGSILNLIGPRLISQITNYISAGLHGTIKISTIGHLGMILAIMYA
LGFVFNYVQGYMMATIAQRVSQNMRIDISRKINRLPLRYFDQNSTGDILSRVTNDVDTVGQSMNQSLSTVISSLTMFFGS
AIMMFATNWLMAIAGIVTALLGFAIMMFVIARSQKYFKQQQDLLGEVNDQVDETFSGHLVVKAYNGEQYEKARFANKNQR
LYQAAWKSQFLSGMMMPMMIFVGNLAYVVVCIVGAVLAVQGSISFGTIVAFMLYIRLFTQPLQNLSQAVSSVQSMAAASQ
RVLEFMQQPELADESDKVASIDPVEGQVDFDHVSFGYDPDQVIIKDFNEAVQPGQKVAIVGPTGAGKTTIVNLLMRFYET
NQGQIRIDGHNTADLKRALVHDQFAMVLQDTWLFEGALRDNLVYNREHISDQQLDTVMEAVGLTDLVEQLPKGYDTVLLD
DEMLSAGQKQLITIARAMLKDAPLLILDEATSSVDTRTELKVQRAMDKLMTDKTSFVIAHRLSTIRDADLILVMNHGDVI
ESGTHEELLAQQGFYADLYNSQFEAG

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=396419 LG045_RS07665 WP_056937728.1 1510480..1512240(-) (rcrQ) [Limosilactobacillus gastricus strain LG045]
ATGTCTGTTAGGGAAAAGTCTACTGAGAAATTTTCATTAGCGGGAATTGCGCGGTATTTTAAGCCTTATACGGTAATGTT
GATTATTGCCGCTCTCTTATCAATTGTCGGCTCCATTCTTAATTTGATCGGTCCCCGCTTAATTAGCCAAATTACGAATT
ATATCTCAGCGGGCCTTCATGGCACCATCAAGATAAGCACCATTGGCCACTTGGGGATGATTTTAGCCATTATGTATGCC
TTAGGCTTCGTTTTTAATTACGTGCAAGGTTACATGATGGCGACAATTGCCCAACGGGTCTCGCAGAATATGCGGATTGA
CATTTCGCGCAAGATTAATCGGCTCCCCTTAAGATATTTTGATCAGAATTCAACTGGTGATATTTTAAGTCGGGTGACCA
ATGATGTGGACACCGTTGGCCAATCGATGAACCAAAGTTTATCAACGGTGATTTCGTCCTTAACCATGTTTTTTGGTTCG
GCTATTATGATGTTTGCGACGAATTGGCTTATGGCAATTGCTGGGATCGTGACTGCTCTACTGGGCTTTGCAATTATGAT
GTTTGTGATCGCGCGGTCGCAAAAGTATTTTAAGCAACAACAAGATCTGCTAGGTGAAGTTAACGATCAAGTGGACGAGA
CTTTTTCAGGTCACCTCGTGGTTAAGGCTTATAATGGCGAGCAATACGAAAAGGCACGCTTTGCCAATAAAAATCAACGT
TTATATCAGGCTGCCTGGAAGAGCCAGTTCTTGTCCGGGATGATGATGCCGATGATGATTTTTGTTGGTAACCTAGCTTA
TGTGGTCGTTTGTATCGTGGGGGCGGTCTTAGCCGTTCAAGGCAGTATTTCCTTTGGGACGATTGTGGCCTTCATGTTGT
ATATTCGCTTATTTACTCAACCGCTACAGAACCTTTCGCAGGCAGTAAGCAGTGTGCAATCCATGGCAGCTGCTAGTCAA
CGGGTACTTGAGTTCATGCAACAACCAGAATTAGCTGATGAAAGTGATAAGGTGGCCTCGATTGATCCAGTTGAAGGGCA
AGTTGACTTTGATCATGTTAGCTTTGGTTATGATCCTGATCAGGTCATTATCAAGGACTTTAACGAAGCTGTTCAACCCG
GGCAAAAAGTAGCGATTGTTGGTCCGACGGGGGCTGGAAAAACCACGATTGTGAACTTGTTGATGCGATTTTACGAAACT
AACCAGGGTCAAATTCGAATTGATGGTCATAATACGGCAGACTTGAAACGCGCCTTGGTCCATGATCAATTCGCAATGGT
TCTACAAGATACTTGGCTCTTTGAAGGGGCTTTGCGTGACAATTTGGTCTATAATCGGGAACACATTAGTGATCAGCAAC
TTGATACGGTTATGGAAGCAGTGGGATTAACGGATCTAGTTGAACAATTGCCAAAAGGTTACGACACGGTCTTGCTGGAT
GATGAAATGTTATCAGCTGGACAAAAGCAATTAATTACTATTGCGCGGGCGATGCTTAAAGATGCGCCATTATTGATTTT
AGATGAGGCCACTAGTAGTGTTGATACCCGGACGGAATTGAAGGTCCAAAGGGCGATGGATAAGTTGATGACTGATAAAA
CAAGTTTTGTGATCGCCCATCGTTTATCAACGATTCGCGATGCTGACTTGATTTTGGTAATGAATCATGGGGACGTGATT
GAAAGTGGGACGCATGAAGAATTATTAGCTCAACAGGGCTTCTATGCTGATCTTTATAATAGTCAATTCGAAGCCGGATA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(27-302)

ABC transporter (ABC_tran)

(365-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

53.114

98.635

0.524

Multiple sequence alignment