Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   LG045_RS07670 Genome accession   NZ_CP045729
Coordinates   1512261..1514015 (-) Length   584 a.a.
NCBI ID   WP_056937706.1    Uniprot ID   A0A0R1V741
Organism   Limosilactobacillus gastricus strain LG045     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1507261..1519015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG045_RS07645 (LG045_07645) radA 1507356..1508729 (-) 1374 WP_056937702.1 DNA repair protein RadA Machinery gene
  LG045_RS07650 (LG045_07650) - 1508745..1509280 (-) 536 Protein_1491 dUTP diphosphatase -
  LG045_RS07655 (LG045_07655) - 1509423..1509713 (+) 291 WP_056937704.1 GNAT family N-acetyltransferase -
  LG045_RS07660 (LG045_07660) rpiA 1509730..1510419 (+) 690 WP_056937705.1 ribose-5-phosphate isomerase RpiA -
  LG045_RS07665 (LG045_07665) rcrQ 1510480..1512240 (-) 1761 WP_056937728.1 ABC transporter ATP-binding protein Regulator
  LG045_RS07670 (LG045_07670) rcrP 1512261..1514015 (-) 1755 WP_056937706.1 ABC transporter ATP-binding protein Regulator
  LG045_RS07675 (LG045_07675) - 1514036..1514467 (-) 432 WP_056937707.1 MarR family winged helix-turn-helix transcriptional regulator -
  LG045_RS07680 (LG045_07680) - 1514583..1515134 (-) 552 WP_056937708.1 hypothetical protein -
  LG045_RS07685 (LG045_07685) - 1515135..1516469 (-) 1335 WP_056937709.1 aminopeptidase C -
  LG045_RS07690 (LG045_07690) - 1516471..1517346 (-) 876 WP_056937710.1 alpha/beta hydrolase -
  LG045_RS07695 (LG045_07695) - 1517336..1518024 (-) 689 Protein_1500 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 584 a.a.        Molecular weight: 63907.57 Da        Isoelectric Point: 5.3570

>NTDB_id=396420 LG045_RS07670 WP_056937706.1 1512261..1514015(-) (rcrP) [Limosilactobacillus gastricus strain LG045]
MISILKYLSKREWGYVGISIVFIVLQVWLDLKLPSYMSAITTLVETSGSKMSDTLLQGGYMLLCALGSMAAATITGYLVA
KVAAGLSRTLRSLTYNQILDFSNAEIGHFSTASLINRSTNDIVQIQNLVAMGLQAIVKAPIMAIWALTLIIDKSWQWTAS
TGIAVLVLVVMLALVLLVAVPRYRRVQSLTDNLNRVTREQLTGIRVVWAYNAEQYEEEKFDQANDELTNNNLVANRVMAL
MSPTMTLINSGLTLAIYWIGAYLIEAASLSSKLPLFSDMVVFSNYAMQVIMAFMLLNMIFILLPRAQVSAKRIIQVLTTP
ISIQDGQGGAPKRQGQVEFKHVSFTYPGSQEKSLSDVSFTVEAGSTLAIIGATGSGKTTLVNLINRLYDVTDGQVLVDGQ
DVRDYQLAELRQRVALAPQKATLFKGTIASNVSYGDRGTGEISSTQIDTALAAAQATEFVQQKAEGINEPISQGGTNVSG
GQRQRLSIARSLAGNAEIMIFDDTFSALDYRTDAQLRHDLNQEFTQETKIIVAQRIGTIRDADQILVLDHGKIVGQGTHE
ELLANSPEYLEIAESQLSPDELKK

Nucleotide


Download         Length: 1755 bp        

>NTDB_id=396420 LG045_RS07670 WP_056937706.1 1512261..1514015(-) (rcrP) [Limosilactobacillus gastricus strain LG045]
ATGATTAGTATTTTAAAATACCTGTCGAAGCGAGAATGGGGATATGTAGGGATTTCCATTGTCTTTATCGTTTTACAAGT
TTGGTTAGATTTGAAATTGCCAAGTTATATGTCGGCCATTACGACTTTGGTCGAAACGTCCGGTAGTAAAATGAGCGATA
CTTTACTGCAGGGGGGATATATGTTACTTTGTGCCCTTGGCAGCATGGCCGCAGCTACGATCACAGGATACCTTGTTGCC
AAAGTGGCAGCGGGGTTATCGAGAACTTTACGATCATTAACCTATAATCAGATTTTAGATTTTTCCAATGCTGAAATTGG
TCATTTTTCCACCGCTAGTTTAATTAATCGGTCTACCAACGATATTGTCCAAATTCAAAACCTAGTAGCGATGGGCTTAC
AAGCAATTGTTAAAGCACCCATCATGGCTATTTGGGCCTTAACCTTGATTATTGATAAAAGTTGGCAATGGACGGCATCA
ACTGGGATTGCGGTATTGGTATTAGTGGTAATGCTAGCCCTGGTCTTACTTGTGGCGGTTCCGCGGTATCGGCGGGTTCA
ATCGTTGACTGATAATTTAAATCGGGTTACGCGGGAACAACTTACGGGGATCCGAGTAGTATGGGCATATAATGCCGAAC
AATATGAAGAAGAAAAGTTTGATCAAGCTAATGACGAACTGACGAATAATAATTTAGTAGCTAACCGAGTGATGGCGCTC
ATGTCGCCAACGATGACCCTGATTAACTCAGGATTAACTTTGGCGATCTATTGGATTGGGGCTTATCTTATCGAAGCGGC
GAGTTTATCAAGTAAGCTACCCCTCTTTTCAGATATGGTGGTCTTCTCCAACTATGCCATGCAGGTAATTATGGCCTTCA
TGTTATTGAACATGATCTTTATTCTGCTTCCTCGGGCTCAAGTATCAGCTAAGCGGATCATTCAGGTTTTAACAACGCCG
ATTTCCATTCAAGATGGTCAAGGAGGTGCGCCAAAACGACAGGGGCAAGTAGAATTCAAACATGTTTCCTTTACCTATCC
TGGATCACAGGAAAAGTCATTGTCTGATGTCAGTTTCACCGTTGAGGCTGGATCAACTTTGGCAATAATTGGGGCCACAG
GATCTGGGAAAACGACCTTGGTGAATTTAATTAATCGTTTATATGATGTTACGGACGGACAAGTGTTAGTGGACGGGCAA
GATGTTCGCGACTATCAATTAGCTGAATTACGGCAACGGGTGGCCTTGGCTCCGCAAAAAGCGACCCTCTTTAAGGGGAC
GATTGCTTCCAATGTTAGCTATGGTGATCGCGGTACCGGTGAAATTTCATCGACTCAAATTGATACGGCCCTTGCGGCGG
CCCAAGCGACGGAGTTTGTGCAACAAAAAGCAGAAGGTATTAATGAACCAATTTCGCAAGGCGGGACAAATGTTTCTGGT
GGGCAGCGTCAACGGCTGTCGATTGCGCGCTCTTTGGCAGGTAATGCCGAAATTATGATTTTTGATGATACCTTCTCGGC
CCTTGATTATCGGACGGATGCTCAATTACGTCACGACCTAAACCAAGAATTTACTCAAGAAACCAAGATTATCGTGGCTC
AACGGATCGGGACTATCCGGGACGCCGATCAAATCCTGGTCCTTGACCATGGTAAAATCGTTGGTCAAGGGACGCATGAG
GAATTATTAGCCAATAGTCCGGAGTATCTTGAAATTGCTGAGTCGCAATTATCACCAGATGAGTTAAAGAAATAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-293)

ABC transporter (ABC_tran)

(354-505)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R1V741

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

50.921

100

0.521

Multiple sequence alignment