Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | GFU70_RS24445 | Genome accession | NZ_CP045701 |
| Coordinates | 5638360..5639706 (+) | Length | 448 a.a. |
| NCBI ID | WP_058546857.1 | Uniprot ID | - |
| Organism | Pseudomonas brassicacearum strain S-1 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Genomic Context
Location: 5633360..5644706
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GFU70_RS24420 (GFU70_24415) | pgeF | 5633570..5634295 (-) | 726 | WP_153388918.1 | peptidoglycan editing factor PgeF | - |
| GFU70_RS24425 (GFU70_24420) | rluD | 5634292..5635254 (-) | 963 | WP_003205696.1 | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | - |
| GFU70_RS24430 (GFU70_24425) | - | 5635405..5636421 (+) | 1017 | WP_058546854.1 | outer membrane protein assembly factor BamD | - |
| GFU70_RS24435 (GFU70_24430) | - | 5636548..5636784 (+) | 237 | WP_058546855.1 | PP0621 family protein | - |
| GFU70_RS24440 (GFU70_24435) | pilS | 5636774..5638363 (+) | 1590 | WP_153388919.1 | two-component system sensor histidine kinase NtrB | Regulator |
| GFU70_RS24445 (GFU70_24440) | pilR | 5638360..5639706 (+) | 1347 | WP_058546857.1 | sigma-54-dependent transcriptional regulator | Regulator |
| GFU70_RS24450 (GFU70_24445) | - | 5639789..5640154 (-) | 366 | WP_039014157.1 | DUF6124 family protein | - |
| GFU70_RS24455 (GFU70_24450) | thiO | 5642089..5643189 (-) | 1101 | WP_153388920.1 | glycine oxidase ThiO | - |
| GFU70_RS24460 (GFU70_24455) | - | 5643246..5643647 (-) | 402 | WP_058544090.1 | type IV pilin protein | - |
Sequence
Protein
Download Length: 448 a.a. Molecular weight: 50127.44 Da Isoelectric Point: 5.5813
>NTDB_id=396112 GFU70_RS24445 WP_058546857.1 5638360..5639706(+) (pilR) [Pseudomonas brassicacearum strain S-1]
MNNRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLTEAQTLLADEAFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLDTAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPSVGVPASTLERCLLGDSPPMRSVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRSTQGFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDGEVAAGRFRQDLYYRLNVIELRVPPLRERREDIELLA
NHMLQRLAANTGSPPVRLHPQALDALKNYRFPGNVRELENMLERAYTLCEQQQIEADDLRLAEGSSASEAGNPDLMQVDN
LEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD
MNNRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLTEAQTLLADEAFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLDTAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPSVGVPASTLERCLLGDSPPMRSVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRSTQGFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDGEVAAGRFRQDLYYRLNVIELRVPPLRERREDIELLA
NHMLQRLAANTGSPPVRLHPQALDALKNYRFPGNVRELENMLERAYTLCEQQQIEADDLRLAEGSSASEAGNPDLMQVDN
LEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD
Nucleotide
Download Length: 1347 bp
>NTDB_id=396112 GFU70_RS24445 WP_058546857.1 5638360..5639706(+) (pilR) [Pseudomonas brassicacearum strain S-1]
TTGAATAATCGCTCACGGCAACGAATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAAGAACCTTACCGAGGCCCAAACCCTGCTGGCGGACGAAGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTGCAGCACATCCAGCAACGTTACCCCCAACTGCCC
GTGGCGATGATCACCGCCTATGGCAGCCTGGACACCGCCATCGACGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAA
ACCGGTCGACCTGGGCCGGCTGCGGGAGCTGGTCACCAGTGCCCTGCGCCTGCCATCGGTTGGCGTTCCGGCAAGCACCC
TTGAGCGTTGCCTGCTGGGCGACTCCCCTCCAATGCGCAGCGTGCGCAAACAGATTGAAAAACTCGCTCGCAGCCAGGCA
CCGGTGTACATCAGTGGGGAGTCAGGTTGCGGCAAGGAACTGGTCGCCCGACTGATCCACGAACAGGGCCCCCGCTCCAC
CCAAGGGTTTGTGCCTGTCAATTGTGGGGCGATTCCCACGGAGCTGATGGAAAGCGAGTTTTTCGGCCATCGAAAAGGCA
GCTTCAGCGGCGCCATCGAAGACAAGCCCGGGCTGTTCCAGGCCGCCCACGGCGGGACGCTGTTCCTCGACGAGGTGGCC
GACCTGCCCCTGGCGATGCAGGTCAAACTGTTGCGGGCGATCCAGGAAAAAGCCGTGCGCGCCGTTGGCGGCCAGCAGGA
AGAAGTGGTGGATGTGCGAATACTCTGTGCCACCCACAAGGACCTGGACGGCGAAGTGGCCGCCGGGCGCTTTCGCCAGG
ATTTGTATTACCGGCTGAACGTCATCGAACTGCGCGTGCCGCCCCTGCGCGAACGCCGCGAAGACATCGAGCTGCTGGCC
AACCACATGCTCCAGCGCCTGGCAGCCAATACCGGCAGTCCACCGGTCAGATTGCATCCACAGGCGTTGGACGCTCTCAA
GAATTACCGCTTCCCGGGCAATGTGCGGGAATTGGAGAACATGCTCGAACGGGCCTATACCCTTTGCGAACAGCAGCAGA
TCGAAGCGGATGACCTGCGCCTGGCCGAGGGCAGTAGTGCTAGCGAGGCGGGCAACCCCGATTTGATGCAGGTCGACAAC
CTGGAGGATTACCTGGAAGACGTCGAGCGTAAGCTCATCCTCCAGGCATTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAAATTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGCTTGGGCTGGATTGA
TTGAATAATCGCTCACGGCAACGAATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAAGAACCTTACCGAGGCCCAAACCCTGCTGGCGGACGAAGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTGCAGCACATCCAGCAACGTTACCCCCAACTGCCC
GTGGCGATGATCACCGCCTATGGCAGCCTGGACACCGCCATCGACGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAA
ACCGGTCGACCTGGGCCGGCTGCGGGAGCTGGTCACCAGTGCCCTGCGCCTGCCATCGGTTGGCGTTCCGGCAAGCACCC
TTGAGCGTTGCCTGCTGGGCGACTCCCCTCCAATGCGCAGCGTGCGCAAACAGATTGAAAAACTCGCTCGCAGCCAGGCA
CCGGTGTACATCAGTGGGGAGTCAGGTTGCGGCAAGGAACTGGTCGCCCGACTGATCCACGAACAGGGCCCCCGCTCCAC
CCAAGGGTTTGTGCCTGTCAATTGTGGGGCGATTCCCACGGAGCTGATGGAAAGCGAGTTTTTCGGCCATCGAAAAGGCA
GCTTCAGCGGCGCCATCGAAGACAAGCCCGGGCTGTTCCAGGCCGCCCACGGCGGGACGCTGTTCCTCGACGAGGTGGCC
GACCTGCCCCTGGCGATGCAGGTCAAACTGTTGCGGGCGATCCAGGAAAAAGCCGTGCGCGCCGTTGGCGGCCAGCAGGA
AGAAGTGGTGGATGTGCGAATACTCTGTGCCACCCACAAGGACCTGGACGGCGAAGTGGCCGCCGGGCGCTTTCGCCAGG
ATTTGTATTACCGGCTGAACGTCATCGAACTGCGCGTGCCGCCCCTGCGCGAACGCCGCGAAGACATCGAGCTGCTGGCC
AACCACATGCTCCAGCGCCTGGCAGCCAATACCGGCAGTCCACCGGTCAGATTGCATCCACAGGCGTTGGACGCTCTCAA
GAATTACCGCTTCCCGGGCAATGTGCGGGAATTGGAGAACATGCTCGAACGGGCCTATACCCTTTGCGAACAGCAGCAGA
TCGAAGCGGATGACCTGCGCCTGGCCGAGGGCAGTAGTGCTAGCGAGGCGGGCAACCCCGATTTGATGCAGGTCGACAAC
CTGGAGGATTACCTGGAAGACGTCGAGCGTAAGCTCATCCTCCAGGCATTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAAATTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGCTTGGGCTGGATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
79.73 |
99.107 |
0.79 |
| pilR | Acinetobacter baumannii strain A118 |
50.109 |
100 |
0.513 |