Detailed information NTG0395929

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: GFH30_RS12200
• Genome accession: NZ_CP045650
• Coordinates: 2548329..2549687 (+)
• Length: 452 a.a.
• NCBI ID: WP_153389376.1
• Uniprot ID: -
• Organism: Acinetobacter wanghuae strain dk386
• Function: regulation of type IV pilus assembly (predicted from homology) Competence regulation

Genomic Context

Location: 2543329..2554687

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GFH30_RS12180 (GFH30_12175)	thrC	2543563..2544702 (+)	1140	WP_153372967.1	threonine synthase	-
GFH30_RS12185 (GFH30_12180)	-	2544768..2545817 (-)	1050	WP_406565736.1	serine hydrolase	-
GFH30_RS12190 (GFH30_12185)	-	2546033..2546668 (+)	636	WP_153372969.1	response regulator	-
GFH30_RS12195 (GFH30_12190)	pilS	2546683..2548248 (+)	1566	WP_153372971.1	PAS domain-containing sensor histidine kinase	Regulator
GFH30_RS12200 (GFH30_12195)	pilR	2548329..2549687 (+)	1359	WP_153389376.1	sigma-54 dependent transcriptional regulator	Regulator
GFH30_RS12205 (GFH30_12200)	-	2549696..2550865 (-)	1170	WP_153372975.1	S41 family peptidase	-
GFH30_RS12210 (GFH30_12205)	gpmI	2550883..2552434 (-)	1552	Protein_2357	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	-
GFH30_RS12215 (GFH30_12210)	lptG	2552558..2553628 (-)	1071	WP_153372977.1	LPS export ABC transporter permease LptG	-

Sequence

Protein

• Length: 452 a.a.
• Molecular weight: 51442.01 Da
• Isoelectric Point: 7.1280

>NTDB_id=395929 GFH30_RS12200 WP_153389376.1 2548329..2549687(+) (pilR) [Acinetobacter wanghuae strain dk386]
MQMSLTRMGIRTHIAHRLEDAKKCLSDHQYDACLTDLNLPDGNGLQLLEWISQRCPTLPVAVLTAYGNMDIAIAALKAGA
FDFVSKPINQKHLEQLLQKALNKPVDYYHHNQQDSLEHRMLIGQSQPIQQLRITLQKIARSQAPVFITGESGTGKEVVAN
LVHRLSNRNEGPFIAINCGAIPSELMESELFGHKKGSFTGATQDKQGLIQSAHGGSLFLDEIAELPLNMQVKLLRAVQEK
RIRPLGSDGEIDVDFRVISASHQDLDALVQQGKFRQDLYFRIHVMDLVLPPLRERGNDILLLAEHFIHRIAKEWQIPAKR
LTERSKELLLGQYYPGNVRELRNIIERAMTLSDDDTIDLQHLQTAPLRQTFNPSVESHTPQEQTTHDTFMVPKKLPEEGL
ERYIEKIEKEILLNALNITHWNRTLAAKKLGMSFRSLRYRLKKFGLDTDDEE

Nucleotide

• Length: 1359 bp

>NTDB_id=395929 GFH30_RS12200 WP_153389376.1 2548329..2549687(+) (pilR) [Acinetobacter wanghuae strain dk386]
ATGCAAATGTCTCTGACACGCATGGGAATTCGCACACACATTGCACATCGTCTTGAAGATGCAAAAAAATGCCTATCCGA
TCATCAATATGATGCCTGCTTGACTGACCTGAATCTGCCTGATGGCAATGGTTTACAGCTGCTAGAGTGGATTAGTCAGC
GTTGCCCGACTTTGCCTGTGGCTGTTCTCACCGCCTATGGCAACATGGATATTGCCATCGCTGCCCTTAAAGCGGGTGCA
TTTGATTTTGTTAGCAAACCGATTAATCAAAAACATTTAGAACAATTACTACAAAAAGCACTGAACAAACCTGTCGATTA
TTATCATCATAATCAACAAGACTCGCTTGAGCATCGTATGCTCATTGGGCAATCTCAACCGATTCAACAACTGCGGATTA
CTTTACAAAAAATTGCGCGCTCTCAAGCACCGGTTTTTATTACTGGTGAATCGGGCACGGGTAAAGAAGTGGTTGCCAAT
TTAGTCCATCGTTTAAGTAATCGGAATGAAGGCCCTTTTATTGCCATTAACTGCGGTGCAATTCCAAGTGAACTCATGGA
AAGTGAGCTTTTCGGGCATAAAAAAGGCAGCTTTACCGGCGCAACGCAAGACAAGCAAGGTCTCATTCAATCGGCACATG
GCGGTAGCTTATTTTTAGATGAAATTGCTGAATTACCTCTTAATATGCAGGTGAAACTACTGCGTGCCGTACAAGAAAAA
CGAATTCGCCCGCTTGGTTCAGATGGCGAAATTGATGTGGATTTTCGCGTCATTAGTGCCAGTCATCAAGATTTAGATGC
CTTAGTCCAACAAGGTAAATTCCGTCAGGATTTATATTTCCGTATTCATGTGATGGATTTGGTGCTGCCACCGCTACGTG
AACGCGGCAATGATATTTTACTGCTCGCTGAACATTTTATTCATCGCATTGCGAAAGAATGGCAAATTCCGGCTAAACGT
CTCACAGAACGCAGCAAAGAGCTATTATTAGGGCAGTATTATCCGGGTAATGTACGTGAGTTACGTAATATTATTGAACG
TGCGATGACACTATCTGACGATGATACGATTGATTTACAACACTTACAGACCGCACCACTCAGACAAACATTTAATCCGA
GTGTCGAGAGCCATACGCCTCAAGAGCAAACCACTCATGACACATTTATGGTGCCCAAAAAATTACCTGAAGAAGGTCTT
GAGCGTTATATCGAAAAAATTGAAAAAGAAATTTTACTGAATGCACTGAATATTACGCATTGGAATCGAACATTGGCTGC
CAAAAAACTTGGCATGTCTTTTCGTTCACTGCGTTATCGTTTAAAGAAATTTGGTTTAGACACAGACGATGAAGAATAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (121-287)

• Response regulator receiver domain (Response_reg) (4-97)

• Bacterial regulatory protein, Fis family (HTH_8) (404-444)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Acinetobacter baumannii strain A118	74.336	100	0.743
pilR	Pseudomonas aeruginosa PAK	49.664	98.894	0.491