Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   GFH30_RS12195 Genome accession   NZ_CP045650
Coordinates   2546683..2548248 (+) Length   521 a.a.
NCBI ID   WP_153372971.1    Uniprot ID   A0A5Q0P5J5
Organism   Acinetobacter wanghuae strain dk386     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2541683..2553248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFH30_RS12175 (GFH30_12170) - 2542202..2543506 (+) 1305 WP_153372965.1 homoserine dehydrogenase -
  GFH30_RS12180 (GFH30_12175) thrC 2543563..2544702 (+) 1140 WP_153372967.1 threonine synthase -
  GFH30_RS12185 (GFH30_12180) - 2544768..2545817 (-) 1050 WP_406565736.1 serine hydrolase -
  GFH30_RS12190 (GFH30_12185) - 2546033..2546668 (+) 636 WP_153372969.1 response regulator -
  GFH30_RS12195 (GFH30_12190) pilS 2546683..2548248 (+) 1566 WP_153372971.1 PAS domain-containing sensor histidine kinase Regulator
  GFH30_RS12200 (GFH30_12195) pilR 2548329..2549687 (+) 1359 WP_153389376.1 sigma-54 dependent transcriptional regulator Regulator
  GFH30_RS12205 (GFH30_12200) - 2549696..2550865 (-) 1170 WP_153372975.1 S41 family peptidase -
  GFH30_RS12210 (GFH30_12205) gpmI 2550883..2552434 (-) 1552 Protein_2357 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59533.06 Da        Isoelectric Point: 6.0730

>NTDB_id=395928 GFH30_RS12195 WP_153372971.1 2546683..2548248(+) (pilS) [Acinetobacter wanghuae strain dk386]
MPQQSIHSELNQYHLGLWYTAYRLIISVGLLLIFMLTYDGMGSEYQFPQLYGYVLATFVTISSIQLLTIKLVKNYISQQL
IIIFFTDLCALSLLTLATNGPNLHLGLLFVITIFSASLLIDAKKSLVITLIAVISVIYQHFIGSIFEISSLTNIGNSTLL
AFLFFVVYGTGQIAVRRFQIMENLNFSQSIELNRLQNINRYILEQIETGYLVLDENFHVVLSNPAACHLLGIPAMYAHDK
FPLYRSQPDLFELIKFEDLENGERFQFESQQSRYNIHVQVQKLLVPHQTLILLVLEDAKKLNQQVQQLKLASLGQLSASI
AHEIRNPLAAIVQANDLFQDSEISQQAVLNQMISKQAIRIDRIIQDTLNMVKNKEMHPILIQLNAFLPLLIREDLADVAH
QIRFNMDMPLAIQFDEEQLRQVLINLVRNAIRHNDPELDYIEINIRPYEHKVWIDVRDFGDGVAITDQASLFKPFFSTSI
HGTGLGLYLSHSFCEANQAQLNYIQQEQGACFRISCQRITV

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=395928 GFH30_RS12195 WP_153372971.1 2546683..2548248(+) (pilS) [Acinetobacter wanghuae strain dk386]
ATGCCACAGCAGTCGATCCATTCGGAACTCAACCAATACCATTTGGGGCTGTGGTATACCGCCTATCGTCTCATTATTAG
CGTCGGTTTATTGCTGATTTTTATGCTGACCTATGATGGCATGGGTTCCGAATATCAATTTCCACAATTGTATGGTTATG
TTTTAGCAACGTTTGTCACAATCAGTTCAATCCAACTTTTGACCATTAAACTTGTTAAAAATTATATTTCACAACAATTA
ATTATTATTTTCTTTACCGATCTTTGTGCCTTAAGTTTACTGACCCTTGCGACCAATGGTCCAAACTTACATTTAGGCTT
ATTGTTTGTGATTACGATTTTTTCAGCGTCTTTGCTCATTGATGCTAAAAAATCCCTCGTCATTACCTTGATTGCTGTCA
TTAGTGTCATTTATCAGCATTTTATCGGCAGTATCTTTGAAATTTCATCTTTAACCAATATTGGCAATAGCACGCTCCTT
GCCTTTTTATTTTTTGTGGTCTACGGCACGGGGCAAATTGCGGTACGTCGTTTTCAAATTATGGAGAATCTTAATTTCTC
CCAATCGATTGAATTGAATCGCTTACAAAATATTAACCGTTATATTTTAGAGCAAATTGAAACCGGCTATTTAGTACTTG
ATGAAAACTTTCATGTGGTACTGAGTAATCCCGCAGCGTGTCATTTACTAGGCATTCCTGCCATGTATGCCCATGATAAA
TTTCCACTGTATCGCTCCCAACCCGATTTATTTGAACTGATTAAATTTGAAGATTTAGAAAATGGCGAGCGCTTTCAATT
TGAATCACAGCAAAGCCGCTATAACATTCATGTTCAAGTACAAAAATTATTAGTACCTCATCAAACCTTAATTTTGTTAG
TTCTGGAAGATGCAAAAAAACTCAATCAGCAGGTACAACAACTCAAACTTGCCTCTTTAGGACAGCTTTCAGCCAGTATT
GCGCATGAAATTCGTAATCCTTTAGCTGCCATTGTACAGGCCAATGATTTATTCCAAGATTCAGAAATAAGTCAGCAAGC
CGTTCTAAATCAAATGATTAGTAAACAAGCGATACGAATTGATCGGATTATTCAAGACACCTTGAATATGGTCAAAAATA
AAGAGATGCACCCCATCTTGATTCAGCTTAATGCGTTCTTGCCGCTGTTAATTCGTGAAGACTTAGCCGATGTTGCCCAT
CAAATTCGTTTCAACATGGATATGCCATTGGCGATTCAATTTGATGAAGAACAGCTTCGACAAGTGTTGATTAATTTAGT
GCGTAATGCCATTCGACACAATGACCCCGAATTGGATTATATCGAAATCAATATTCGCCCTTATGAACATAAAGTATGGA
TTGATGTGCGTGATTTTGGTGACGGCGTCGCCATCACTGATCAAGCATCTTTGTTTAAACCATTTTTCAGCACATCTATT
CATGGCACAGGTTTAGGATTATATTTATCGCATAGTTTTTGCGAAGCCAATCAGGCTCAGCTAAATTACATACAACAAGA
ACAAGGCGCATGCTTTCGCATTAGCTGCCAACGAATAACAGTTTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-372)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Q0P5J5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

58.614

96.929

0.568

Multiple sequence alignment