Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   GFH30_RS05060 Genome accession   NZ_CP045650
Coordinates   1111389..1112093 (+) Length   234 a.a.
NCBI ID   WP_153371199.1    Uniprot ID   -
Organism   Acinetobacter wanghuae strain dk386     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1106389..1117093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFH30_RS05050 (GFH30_05050) - 1108578..1110722 (+) 2145 WP_153371197.1 TonB-dependent receptor domain-containing protein -
  GFH30_RS05055 (GFH30_05055) - 1110818..1111240 (-) 423 WP_153371198.1 OsmC family protein -
  GFH30_RS05060 (GFH30_05060) crp 1111389..1112093 (+) 705 WP_153371199.1 cAMP-activated global transcriptional regulator CRP Regulator
  GFH30_RS05065 (GFH30_05065) - 1112253..1113302 (+) 1050 WP_153371200.1 NADP(H)-dependent aldo-keto reductase -
  GFH30_RS05070 (GFH30_05070) clpB 1113553..1116132 (+) 2580 WP_153371201.1 ATP-dependent chaperone ClpB -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26240.90 Da        Isoelectric Point: 4.6523

>NTDB_id=395907 GFH30_RS05060 WP_153371199.1 1111389..1112093(+) (crp) [Acinetobacter wanghuae strain dk386]
MTSNFSQLSTDALSPGQLPDSVKALLKRAYINRYPKRTTIIDAGSESKSLYLILKGSVSIILREDDEREIVVAYLNAGDF
FGEMGLFESNPQRTAEVRTRDVCEIAEITYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDVSLEPADAATDELDDE

Nucleotide


Download         Length: 705 bp        

>NTDB_id=395907 GFH30_RS05060 WP_153371199.1 1111389..1112093(+) (crp) [Acinetobacter wanghuae strain dk386]
ATGACATCAAATTTTTCACAACTAAGCACAGATGCACTTTCTCCGGGGCAACTTCCTGATTCGGTTAAAGCATTATTAAA
ACGTGCGTATATTAATCGTTATCCTAAACGTACAACTATTATCGATGCAGGGTCAGAGTCTAAATCTCTGTATTTAATTC
TGAAGGGGTCTGTATCTATTATTCTTCGTGAAGACGACGAACGTGAAATTGTCGTTGCTTATTTGAATGCGGGTGACTTC
TTTGGGGAAATGGGGTTATTCGAGTCAAATCCGCAACGTACAGCAGAAGTTCGAACCCGTGATGTCTGTGAAATTGCAGA
AATCACTTACGAGAACTTCCACGAACTGAGCAAGCAATATCCTGATTTAAGTTATGCAGTATTTGCTCAGTTAGTCCGTC
GTTTAAAAAATACCACACGTAAAGTCACGGATCTTGCATTTATTGATGTATCAGGTCGTATTGCACGTTGTTTAATTGAC
CTATCAGCGCAACCAGAAGCGATGATTCTGCCAAATGGACGCCAAATCCGTATTACCCGTCAAGAGATTGGTCGTATTGT
GGGGTGTTCGCGTGAAATGGTCGGTCGTGTGTTAAAAACGCTTGAAGAGCAAGGCATGATTGAAACAGATGGTAAAGCCA
TTTTGATTTTTGATGTGTCACTAGAGCCAGCAGATGCAGCGACTGATGAGCTAGATGACGAATAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-219)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

90.171

100

0.902
  crp Vibrio cholerae strain A1552

47.805

87.607

0.419
  crp Haemophilus influenzae Rd KW20

48.705

82.479

0.402

Multiple sequence alignment