Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   SGGB_RS08105 Genome accession   NC_017576
Coordinates   1637981..1638982 (-) Length   333 a.a.
NCBI ID   WP_009854678.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus ATCC 43143     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1632981..1643982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGGB_RS08090 (SGGB_1578) thrS 1633254..1635200 (-) 1947 WP_012962255.1 threonine--tRNA ligase -
  SGGB_RS08095 (SGGB_1579) - 1635551..1636885 (-) 1335 WP_009854676.1 glycosyltransferase family 4 protein -
  SGGB_RS08100 (SGGB_1580) - 1636887..1637885 (-) 999 WP_012962256.1 glycosyltransferase family 4 protein -
  SGGB_RS08105 (SGGB_1581) ccpA 1637981..1638982 (-) 1002 WP_009854678.1 catabolite control protein A Regulator
  SGGB_RS08110 (SGGB_1582) - 1639310..1640395 (+) 1086 WP_012962257.1 M24 family metallopeptidase -
  SGGB_RS08115 (SGGB_1583) - 1640429..1640755 (-) 327 WP_009854680.1 DMT family transporter -
  SGGB_RS08120 (SGGB_1584) - 1641004..1641501 (+) 498 WP_012962258.1 NAD(+) diphosphatase -
  SGGB_RS08125 (SGGB_1585) - 1641553..1643325 (-) 1773 WP_014620200.1 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36497.48 Da        Isoelectric Point: 5.0313

>NTDB_id=39571 SGGB_RS08105 WP_009854678.1 1637981..1638982(-) (ccpA) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
MNTDDTITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANSYFS
ILAKGIDDIAAMYKYNIVLASSDEDDDKEVNVVNTLFAKQVDGIIFMGHHLTEKIRAEFSRSRTPVVLAGTVDLEHQLPS
VNIDYKAAVADVVDILAKNNKEIAFVSGPLIDDINGKVRLAGYKEGLEKNGLSFKEGLVFEANYNYKDGFELAQRVINSG
ATAAFVAEDELAAGLLNGLFEAGKKVPEDFEIITSNDSPITSYTRPNLSSISQPVYDLGAVSMRMLTKIMNKEELEEKEI
LLNHGLTTRGTTR

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=39571 SGGB_RS08105 WP_009854678.1 1637981..1638982(-) (ccpA) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
ATGAACACTGATGATACGATTACAATTTATGACGTTGCCCGAGAAGCAGGCGTCTCTATGGCAACAGTTAGTCGTGTTGT
AAATGGCAATAAAAACGTAAAGGAAAACACACGTAAAAAAGTCCTTGAAGTTATTGATCGTTTGGATTATCGTCCAAATG
CCGTTGCCCGCGGTTTAGCAAGTAAAAAGACAACAACAGTAGGTGTTGTTATCCCTAATATTGCTAACAGCTATTTCTCA
ATTCTTGCTAAAGGAATTGATGATATTGCCGCTATGTACAAGTACAATATCGTACTTGCTTCAAGTGATGAAGATGATGA
TAAGGAAGTTAACGTTGTCAACACCTTGTTTGCTAAACAAGTTGACGGTATTATCTTCATGGGACATCATTTGACTGAAA
AAATTCGTGCAGAGTTCTCTCGCTCACGCACACCAGTTGTACTTGCGGGTACAGTTGACTTAGAACACCAACTCCCAAGT
GTTAATATTGACTACAAAGCAGCCGTTGCTGATGTTGTTGATATTTTGGCTAAAAACAATAAAGAAATCGCCTTTGTTTC
TGGTCCACTTATCGATGATATCAATGGTAAAGTGCGTTTAGCTGGTTACAAAGAAGGTCTTGAAAAAAATGGCTTATCAT
TCAAAGAAGGTCTTGTCTTTGAAGCTAATTACAACTATAAAGATGGATTTGAACTTGCACAACGTGTGATTAATTCTGGC
GCAACAGCAGCCTTTGTTGCCGAAGACGAATTGGCAGCAGGATTGTTGAATGGCTTGTTCGAAGCTGGCAAAAAAGTTCC
AGAAGACTTTGAAATCATCACAAGCAATGATTCACCAATCACATCATACACACGTCCAAACCTTAGCTCAATCAGCCAAC
CAGTTTATGACCTTGGTGCTGTCAGCATGCGTATGTTGACTAAAATCATGAACAAAGAGGAACTCGAAGAAAAAGAAATT
CTTCTTAACCACGGTCTTACAACACGTGGCACAACACGTTAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(181-332)

Bacterial regulatory proteins, lacI family (LacI)

(8-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

80.48

100

0.805
  ccpA Streptococcus pneumoniae D39

78.378

100

0.784
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

55.891

99.399

0.556

Multiple sequence alignment