Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   HPY17_RS00985 Genome accession   NZ_CP053816
Coordinates   202570..204648 (-) Length   692 a.a.
NCBI ID   WP_175245875.1    Uniprot ID   -
Organism   Vibrio cholerae strain SA7G     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 197570..209648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY17_RS00970 (HPY17_00970) ompR 198691..199413 (+) 723 WP_000230023.1 two-component system response regulator OmpR -
  HPY17_RS00975 (HPY17_00975) envZ 199482..200798 (+) 1317 WP_001222687.1 two-component system sensor histidine kinase EnvZ -
  HPY17_RS00980 (HPY17_00980) - 200823..202223 (-) 1401 WP_069213186.1 uracil-xanthine permease family protein -
  HPY17_RS00985 (HPY17_00985) recG 202570..204648 (-) 2079 WP_175245875.1 ATP-dependent DNA helicase RecG Machinery gene
  HPY17_RS00990 (HPY17_00990) spoT 204766..206883 (-) 2118 WP_000280452.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  HPY17_RS00995 (HPY17_00995) rpoZ 206915..207187 (-) 273 WP_000135052.1 DNA-directed RNA polymerase subunit omega -
  HPY17_RS01000 (HPY17_01000) gmk 207295..207918 (-) 624 WP_000515793.1 guanylate kinase -
  HPY17_RS01005 (HPY17_01005) - 208286..208957 (+) 672 WP_001015358.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 76931.13 Da        Isoelectric Point: 7.5642

>NTDB_id=395518 HPY17_RS00985 WP_175245875.1 202570..204648(-) (recG) [Vibrio cholerae strain SA7G]
MSQLLSAVPLCELSGVGAKVAEKLEKVGLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAAVQGKVMAVDTLFGKRKML
TVKISDGNGTLTLRFFNFTAAMKNNFAEGKFVHAYGEIKRGNQGLEIIHPDYKFFAPAQTPDVEPNLTPVYPTTEGLRQL
TLRNLTDQALALLDKSAVQELLPSGLYDQQMTLAQALKIIHRPSADIDLRLFEQGRHPAQIRLIMEELLAQNLSMLAIRS
QGQQDVALPLPPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLEKPHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQVA
LMAPTELLAEQHALNFAQWLEPMGIQVGWLAGKLKGKARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHR
FGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERIRHACLN
EGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVPN
ASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLFHAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQT
GLADFKIADLVRDQQLVPQVQRIARHIHERYPQNAQAIIDRWLGERDIYAKA

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=395518 HPY17_RS00985 WP_175245875.1 202570..204648(-) (recG) [Vibrio cholerae strain SA7G]
ATGTCACAACTCCTTTCAGCCGTTCCTCTTTGTGAACTCTCCGGTGTCGGGGCCAAAGTCGCCGAAAAACTGGAGAAAGT
CGGTTTGCACACCGTGCAGGATCTGCTGTTTCATCTTCCGCTACGTTATGAAGATCGCACTCGCGTTTATCCGATAGTGC
AACTGCACCACGGTTTATGGGCCGCGGTACAAGGCAAAGTGATGGCAGTGGATACCCTGTTTGGCAAACGCAAAATGCTC
ACCGTGAAAATCAGTGATGGCAACGGTACACTGACACTGCGTTTTTTTAACTTCACCGCGGCGATGAAAAACAACTTTGC
GGAAGGCAAATTTGTGCATGCCTATGGGGAAATCAAACGCGGTAATCAAGGCTTAGAGATCATCCATCCTGACTACAAAT
TCTTTGCCCCTGCGCAAACACCCGATGTCGAACCGAACCTGACTCCGGTTTACCCTACCACTGAAGGGCTGCGCCAACTG
ACCCTGCGTAATTTGACCGACCAAGCGTTGGCGCTACTGGACAAATCCGCGGTGCAGGAGTTACTGCCCTCTGGGCTTTA
CGATCAGCAGATGACCTTGGCCCAAGCGCTGAAAATCATTCACCGCCCATCGGCGGATATCGATTTACGTCTGTTTGAAC
AAGGGCGACATCCGGCGCAAATTCGGCTGATCATGGAAGAACTGCTGGCACAGAATCTCTCTATGCTCGCGATTCGCAGC
CAAGGCCAGCAAGATGTGGCCTTGCCACTGCCCCCCGTCCACCAACTCAAACAACAACTCTTGGCACAGCTTCCCTTTTC
ACCGACTAAGGCGCAGCAGCGTGTGGTCGCCGAAATTGAAGCGGATTTAGAAAAACCACATCCAATGATGCGCTTAGTGC
AAGGCGATGTGGGCTCAGGCAAAACCTTAGTCGCAGCACTTGCGGCAGTGCGGGCGATTGAGCATGGCTATCAAGTGGCC
TTGATGGCTCCCACCGAGCTACTGGCCGAGCAGCACGCACTCAATTTTGCGCAGTGGCTAGAGCCGATGGGCATTCAAGT
GGGGTGGCTCGCGGGTAAGCTCAAAGGCAAAGCGCGTGAAACGGAACTGGCACGTATCGCCAGTGGCGAAGTGAAAATGG
TGGTCGGCACCCATGCGTTGTTCCAAGAGCAAGTGTCGTTTGACCATCTAGCCTTGGTCATTATTGATGAGCAGCATCGC
TTTGGGGTACATCAGCGCTTAGAGCTACGCGAGAAAGGGGCGAAACAAGGCGCGTATCCGCATCAGCTCATCATGACTGC
TACTCCGATCCCGCGTACTTTGGCGATGACGGCTTATGCCGATTTGGAAACCTCTGTGATTGATGAGTTGCCACCCGGAC
GCACTCCGATTCAAACCGTAGCGATTCCGGATACCAAACGCGACGATATTGTTGAGCGTATTCGCCACGCTTGCCTCAAC
GAAGGCAAGCAAGCGTATTGGGTGTGTACTTTGATTGATGAATCCGAAGTGCTGGAAGCACAAGCGGCCGCAGAAACGGC
CGAGGAACTGCAACGTAAACTTCCCGAAGTCAAAATCGGCTTAGTGCATGGCCGGATGAAACCGGCTGAGAAACAAGCGG
TAATGCAAGCGTTTAAAAATAATGAGCTGCATCTGCTCGTCGCCACTACAGTGATTGAAGTGGGCGTGGATGTACCCAAT
GCCAGCTTGATGATCATTGAAAACCCCGAGCGTTTGGGGCTGGCTCAACTACACCAGCTACGCGGCCGAGTCGGGCGTGG
CACAGTTGCCAGCCACTGTGTGCTTCTATTTCATGCGCCATTGTCAAAAACCGCTCAAAAACGCTTAGGCGTTCTGCGTG
AAAGCAATGATGGCTTCGTCATCGCGCAGCGCGACTTGGAAATTCGCGGCCCCGGAGAGCTATTAGGCACCAAACAAACC
GGCTTAGCCGATTTCAAAATTGCCGATCTGGTACGCGATCAGCAATTGGTTCCGCAAGTGCAACGCATCGCGCGACATAT
CCATGAACGCTACCCACAAAATGCACAAGCCATCATCGACCGCTGGTTAGGCGAGCGCGATATTTACGCCAAAGCTTAG

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(15-171)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-674)

Helicase conserved C-terminal domain (Helicase_C)

(479-587)

DEAD/DEAH box helicase (DEAD)

(271-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.744

97.11

0.493
  recG/mmsA Streptococcus pneumoniae R6

39.701

96.821

0.384
  recG/mmsA Streptococcus pneumoniae R36A

39.701

96.821

0.384
  recG Bacillus subtilis subsp. subtilis str. 168

39.478

94.075

0.371