Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GE569_RS03655 | Genome accession | NZ_CP045576 |
| Coordinates | 786926..788110 (-) | Length | 394 a.a. |
| NCBI ID | WP_096750174.1 | Uniprot ID | A0A560VQ00 |
| Organism | Burkholderia gladioli strain KACC 18963 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 781926..793110
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GE569_RS03635 (GE569_03625) | - | 782294..782680 (+) | 387 | WP_013699429.1 | nuclear transport factor 2 family protein | - |
| GE569_RS03640 (GE569_03630) | leuA | 782863..784515 (-) | 1653 | WP_096750171.1 | 2-isopropylmalate synthase | - |
| GE569_RS03645 (GE569_03635) | ybiB | 785015..785995 (-) | 981 | WP_338509628.1 | DNA-binding protein YbiB | - |
| GE569_RS03650 (GE569_03640) | maiA | 786209..786853 (+) | 645 | WP_186021433.1 | maleylacetoacetate isomerase | - |
| GE569_RS03655 (GE569_03645) | pilA | 786926..788110 (-) | 1185 | WP_096750174.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| GE569_RS03660 (GE569_03650) | rsmD | 788300..788914 (+) | 615 | WP_096750175.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| GE569_RS03665 (GE569_03655) | coaD | 789026..789526 (+) | 501 | WP_013699423.1 | pantetheine-phosphate adenylyltransferase | - |
| GE569_RS03670 (GE569_03660) | - | 789593..789865 (+) | 273 | WP_096750714.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| GE569_RS03675 (GE569_03665) | hisC | 790012..791079 (-) | 1068 | WP_096750715.1 | histidinol-phosphate transaminase | - |
| GE569_RS03680 (GE569_03670) | pth | 791175..791780 (-) | 606 | WP_096750176.1 | aminoacyl-tRNA hydrolase | - |
| GE569_RS03685 (GE569_03675) | - | 791877..792491 (-) | 615 | WP_013699419.1 | 50S ribosomal protein L25/general stress protein Ctc | - |
Sequence
Protein
Download Length: 394 a.a. Molecular weight: 41402.44 Da Isoelectric Point: 4.7491
>NTDB_id=395293 GE569_RS03655 WP_096750174.1 786926..788110(-) (pilA) [Burkholderia gladioli strain KACC 18963]
MFSFFKRLIGSKADGAPTDDPDAPTDRQDDAEAPAAEAARPVERVAAPAPAPAVPVEPAAPAQVAPALPAATADEDEAQA
VTAVEIVPPPAPEPAAKKSWIARLRSGLSKTSSSLTSVFVSTKIDEDLYEELETALLMSDAGVDATEYLLGALREKVKAE
RLTDPQQVKAALRGLLIALLAPLEKSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQ
LAIWGERNNVTVVQQESGDPAAVIFDAVGAARARKINVVMADTAGRLPTQLHLMEELRKVKRVIGKAQADAPHEVLLVID
ANTGQNALAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFNAEEFTDALLG
MFSFFKRLIGSKADGAPTDDPDAPTDRQDDAEAPAAEAARPVERVAAPAPAPAVPVEPAAPAQVAPALPAATADEDEAQA
VTAVEIVPPPAPEPAAKKSWIARLRSGLSKTSSSLTSVFVSTKIDEDLYEELETALLMSDAGVDATEYLLGALREKVKAE
RLTDPQQVKAALRGLLIALLAPLEKSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQ
LAIWGERNNVTVVQQESGDPAAVIFDAVGAARARKINVVMADTAGRLPTQLHLMEELRKVKRVIGKAQADAPHEVLLVID
ANTGQNALAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFNAEEFTDALLG
Nucleotide
Download Length: 1185 bp
>NTDB_id=395293 GE569_RS03655 WP_096750174.1 786926..788110(-) (pilA) [Burkholderia gladioli strain KACC 18963]
ATGTTCAGCTTCTTCAAACGATTGATCGGCTCGAAGGCCGACGGCGCGCCGACCGACGACCCGGACGCGCCGACGGACCG
GCAGGACGACGCCGAGGCCCCCGCGGCCGAAGCGGCCCGGCCCGTCGAGCGGGTCGCCGCGCCTGCCCCGGCCCCGGCGG
TTCCGGTCGAGCCGGCCGCGCCCGCGCAAGTCGCCCCTGCTCTCCCCGCCGCCACCGCGGACGAAGACGAAGCGCAGGCC
GTCACGGCCGTCGAGATCGTGCCGCCGCCCGCGCCGGAGCCGGCCGCCAAGAAATCCTGGATCGCGCGCCTGCGCTCGGG
CCTGTCGAAGACCAGTTCCAGCCTGACGAGCGTCTTCGTCAGCACCAAGATCGACGAGGATCTCTACGAGGAGCTCGAGA
CCGCGCTGCTGATGTCCGACGCCGGCGTCGACGCCACCGAGTACCTGCTCGGCGCGCTGCGCGAGAAGGTCAAGGCCGAG
CGGCTGACCGATCCGCAGCAGGTCAAGGCGGCCCTGCGCGGCCTGCTGATCGCGCTGCTCGCGCCGCTCGAGAAGTCACT
GATGCTGGGTCGCGCGCAGCCGCTGGTGATGATGATCGCGGGCGTCAACGGCGCCGGCAAGACCACCAGCATCGGCAAGC
TGGCCAAGCATCTGCAGAGCTTCGACCAGTCGGTGCTGCTGGCCGCCGGGGACACCTTCCGCGCCGCCGCGCGCGAGCAG
CTCGCGATCTGGGGCGAGCGCAACAACGTGACGGTGGTGCAGCAGGAAAGCGGCGATCCGGCCGCGGTGATCTTCGACGC
GGTGGGCGCGGCGCGCGCGCGCAAGATCAACGTGGTGATGGCCGATACGGCGGGCCGCCTGCCCACCCAGCTGCACCTGA
TGGAGGAGCTGCGCAAGGTCAAGCGCGTGATCGGCAAGGCACAGGCCGACGCGCCGCACGAGGTGCTGCTGGTGATCGAC
GCCAACACCGGTCAGAACGCGCTCGCCCAGGTAAAGGCCTTCGACGACGCGCTGGGCCTCACCGGCCTGATCGTCACCAA
GCTCGACGGCACCGCGAAGGGCGGCATCCTCGCCGCGATCGCGCGGCAGCGGCCGGTACCGGTCTACTTCATCGGCGTCG
GCGAGAAGGTGGAGGACCTGCAGCCCTTCAATGCCGAGGAGTTCACCGACGCGCTGCTGGGCTGA
ATGTTCAGCTTCTTCAAACGATTGATCGGCTCGAAGGCCGACGGCGCGCCGACCGACGACCCGGACGCGCCGACGGACCG
GCAGGACGACGCCGAGGCCCCCGCGGCCGAAGCGGCCCGGCCCGTCGAGCGGGTCGCCGCGCCTGCCCCGGCCCCGGCGG
TTCCGGTCGAGCCGGCCGCGCCCGCGCAAGTCGCCCCTGCTCTCCCCGCCGCCACCGCGGACGAAGACGAAGCGCAGGCC
GTCACGGCCGTCGAGATCGTGCCGCCGCCCGCGCCGGAGCCGGCCGCCAAGAAATCCTGGATCGCGCGCCTGCGCTCGGG
CCTGTCGAAGACCAGTTCCAGCCTGACGAGCGTCTTCGTCAGCACCAAGATCGACGAGGATCTCTACGAGGAGCTCGAGA
CCGCGCTGCTGATGTCCGACGCCGGCGTCGACGCCACCGAGTACCTGCTCGGCGCGCTGCGCGAGAAGGTCAAGGCCGAG
CGGCTGACCGATCCGCAGCAGGTCAAGGCGGCCCTGCGCGGCCTGCTGATCGCGCTGCTCGCGCCGCTCGAGAAGTCACT
GATGCTGGGTCGCGCGCAGCCGCTGGTGATGATGATCGCGGGCGTCAACGGCGCCGGCAAGACCACCAGCATCGGCAAGC
TGGCCAAGCATCTGCAGAGCTTCGACCAGTCGGTGCTGCTGGCCGCCGGGGACACCTTCCGCGCCGCCGCGCGCGAGCAG
CTCGCGATCTGGGGCGAGCGCAACAACGTGACGGTGGTGCAGCAGGAAAGCGGCGATCCGGCCGCGGTGATCTTCGACGC
GGTGGGCGCGGCGCGCGCGCGCAAGATCAACGTGGTGATGGCCGATACGGCGGGCCGCCTGCCCACCCAGCTGCACCTGA
TGGAGGAGCTGCGCAAGGTCAAGCGCGTGATCGGCAAGGCACAGGCCGACGCGCCGCACGAGGTGCTGCTGGTGATCGAC
GCCAACACCGGTCAGAACGCGCTCGCCCAGGTAAAGGCCTTCGACGACGCGCTGGGCCTCACCGGCCTGATCGTCACCAA
GCTCGACGGCACCGCGAAGGGCGGCATCCTCGCCGCGATCGCGCGGCAGCGGCCGGTACCGGTCTACTTCATCGGCGTCG
GCGAGAAGGTGGAGGACCTGCAGCCCTTCAATGCCGAGGAGTTCACCGACGCGCTGCTGGGCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
63.576 |
76.65 |
0.487 |