Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LS451_RS00040 Genome accession   NZ_CP045563
Coordinates   9262..9774 (+) Length   170 a.a.
NCBI ID   WP_014081364.1    Uniprot ID   G2KTA2
Organism   Fructilactobacillus sanfranciscensis strain LS451     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4262..14774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LS451_RS00030 (LS451_00030) gyrA 6215..8737 (+) 2523 WP_056957827.1 DNA gyrase subunit A -
  LS451_RS00035 (LS451_00035) rpsF 8934..9233 (+) 300 WP_056957826.1 30S ribosomal protein S6 -
  LS451_RS00040 (LS451_00040) ssb 9262..9774 (+) 513 WP_014081364.1 single-stranded DNA-binding protein Machinery gene
  LS451_RS00045 (LS451_00045) rpsR 9816..10073 (+) 258 WP_041817484.1 30S ribosomal protein S18 -
  LS451_RS00050 (LS451_00050) - 10186..12204 (+) 2019 WP_180996144.1 DHH family phosphoesterase -
  LS451_RS00055 (LS451_00055) rplI 12235..12687 (+) 453 WP_014081367.1 50S ribosomal protein L9 -
  LS451_RS00060 (LS451_00060) dnaB 12716..14148 (+) 1433 Protein_11 replicative DNA helicase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18553.17 Da        Isoelectric Point: 4.5791

>NTDB_id=395178 LS451_RS00040 WP_014081364.1 9262..9774(+) (ssb) [Fructilactobacillus sanfranciscensis strain LS451]
MINTVVLTGRLTRDVDLRYTQSGAAVGTFTLAVDRRFTNSNGDREADFVNCVIWRKPAENLANFVHKGSLIGIEGRLQTR
NYENKQGQRVYVTEVVVDNFTFLEPRQNGGQPSGNNAGNAAPQQNPFGTPDNNNFGGSNNNQNINKGSDNSADPFAGGDQ
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=395178 LS451_RS00040 WP_014081364.1 9262..9774(+) (ssb) [Fructilactobacillus sanfranciscensis strain LS451]
ATGATTAATACCGTTGTCCTAACTGGACGCTTAACACGAGATGTCGATTTGCGATACACCCAAAGTGGCGCAGCTGTAGG
TACTTTTACCTTAGCTGTTGACCGTAGATTCACCAATTCAAATGGTGATCGGGAAGCTGATTTTGTCAATTGTGTTATCT
GGCGTAAACCAGCTGAAAATCTTGCCAACTTCGTTCATAAAGGTTCGTTAATCGGAATTGAAGGTCGTTTACAAACCAGA
AATTACGAAAACAAACAGGGCCAACGTGTCTACGTGACCGAAGTTGTCGTTGATAACTTCACTTTCTTGGAACCACGTCA
AAATGGTGGCCAACCTAGTGGTAACAACGCAGGCAATGCTGCTCCTCAACAAAATCCATTTGGCACACCAGACAATAATA
ATTTTGGTGGTAGCAATAACAACCAAAATATTAATAAAGGATCTGACAATTCTGCTGATCCATTTGCTGGTGGTGACCAA
ATCGATATTTCCGATGACGATCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2KTA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

63.128

100

0.665
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.628

100

0.624
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

62.353

0.365

Multiple sequence alignment