Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LF543_RS00045 | Genome accession | NZ_CP045562 |
| Coordinates | 10496..11005 (+) | Length | 169 a.a. |
| NCBI ID | WP_010022193.1 | Uniprot ID | A0A0C1PRC9 |
| Organism | Fructilactobacillus fructivorans strain LF543 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 5496..16005
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LF543_RS00030 (LF543_00030) | gyrA | 6386..8827 (+) | 2442 | WP_235728166.1 | DNA gyrase subunit A | - |
| LF543_RS00035 (LF543_00035) | - | 9014..9985 (+) | 972 | WP_010022189.1 | GMP reductase | - |
| LF543_RS00040 (LF543_00040) | rpsF | 10168..10470 (+) | 303 | WP_010022191.1 | 30S ribosomal protein S6 | - |
| LF543_RS00045 (LF543_00045) | ssb | 10496..11005 (+) | 510 | WP_010022193.1 | single-stranded DNA-binding protein | Machinery gene |
| LF543_RS00050 (LF543_00050) | rpsR | 11044..11280 (+) | 237 | WP_010022194.1 | 30S ribosomal protein S18 | - |
| LF543_RS00055 (LF543_00055) | - | 11394..13418 (+) | 2025 | WP_010022195.1 | DHH family phosphoesterase | - |
| LF543_RS00060 (LF543_00060) | rplI | 13470..13922 (+) | 453 | WP_010022197.1 | 50S ribosomal protein L9 | - |
| LF543_RS00065 (LF543_00065) | dnaB | 13957..15357 (+) | 1401 | WP_010022199.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 169 a.a. Molecular weight: 18527.13 Da Isoelectric Point: 5.2312
>NTDB_id=395157 LF543_RS00045 WP_010022193.1 10496..11005(+) (ssb) [Fructilactobacillus fructivorans strain LF543]
MINTVVLTGRLTRDVDLRYTQNGAAVGTFTLAVDRRFTNSNGDREADFVNCVIWRKSAENFANFVHKGSLVGIEGRIQTR
NYENKQGQRVYVTEVVVENFTLLEPRSQNGGNGQGQSSNGNHAPSENPFGTPKTSGQSTPNNGKKNDNSNDPFANSGDQI
DISDDDLPF
MINTVVLTGRLTRDVDLRYTQNGAAVGTFTLAVDRRFTNSNGDREADFVNCVIWRKSAENFANFVHKGSLVGIEGRIQTR
NYENKQGQRVYVTEVVVENFTLLEPRSQNGGNGQGQSSNGNHAPSENPFGTPKTSGQSTPNNGKKNDNSNDPFANSGDQI
DISDDDLPF
Nucleotide
Download Length: 510 bp
>NTDB_id=395157 LF543_RS00045 WP_010022193.1 10496..11005(+) (ssb) [Fructilactobacillus fructivorans strain LF543]
ATGATTAATACAGTAGTTCTTACTGGACGCTTAACACGAGACGTTGATTTGCGATACACCCAAAATGGCGCGGCAGTTGG
TACTTTTACCCTAGCTGTTGACCGTCGTTTCACCAATTCGAATGGTGATCGGGAAGCTGACTTCGTCAACTGTGTTATTT
GGCGAAAATCAGCTGAAAACTTTGCCAACTTCGTGCATAAAGGTTCACTTGTTGGAATCGAAGGTCGGATTCAGACCCGA
AATTACGAGAACAAGCAGGGCCAGCGAGTTTATGTTACCGAAGTAGTTGTTGAGAACTTTACCCTCCTTGAACCACGTTC
ACAGAACGGTGGCAATGGTCAGGGTCAAAGCAGCAATGGCAATCACGCTCCTAGTGAAAATCCATTTGGAACTCCAAAGA
CGAGTGGGCAATCCACTCCTAACAATGGCAAAAAGAATGACAATTCGAACGATCCCTTTGCTAACTCTGGAGACCAGATT
GATATTTCCGATGATGATCTTCCATTTTAA
ATGATTAATACAGTAGTTCTTACTGGACGCTTAACACGAGACGTTGATTTGCGATACACCCAAAATGGCGCGGCAGTTGG
TACTTTTACCCTAGCTGTTGACCGTCGTTTCACCAATTCGAATGGTGATCGGGAAGCTGACTTCGTCAACTGTGTTATTT
GGCGAAAATCAGCTGAAAACTTTGCCAACTTCGTGCATAAAGGTTCACTTGTTGGAATCGAAGGTCGGATTCAGACCCGA
AATTACGAGAACAAGCAGGGCCAGCGAGTTTATGTTACCGAAGTAGTTGTTGAGAACTTTACCCTCCTTGAACCACGTTC
ACAGAACGGTGGCAATGGTCAGGGTCAAAGCAGCAATGGCAATCACGCTCCTAGTGAAAATCCATTTGGAACTCCAAAGA
CGAGTGGGCAATCCACTCCTAACAATGGCAAAAAGAATGACAATTCGAACGATCCCTTTGCTAACTCTGGAGACCAGATT
GATATTTCCGATGATGATCTTCCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
67.442 |
100 |
0.686 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.497 |
100 |
0.592 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
62.722 |
0.367 |