Detailed information NTG0039513

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: SPSINT_RS06510
• Genome accession: NC_014925
• Coordinates: 1343498..1343959 (-)
• Length: 153 a.a.
• NCBI ID: WP_015729212.1
• Uniprot ID: -
• Organism: Staphylococcus pseudintermedius HKU10-03
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1338498..1348959

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SPSINT_RS06455 (SPSINT_1276)	-	1338787..1339149 (-)	363	WP_015729203.1	hypothetical protein	-
SPSINT_RS06460 (SPSINT_1277)	-	1339192..1339542 (-)	351	WP_015729204.1	YopX family protein	-
SPSINT_RS06465 (SPSINT_1278)	-	1339539..1339724 (-)	186	WP_015729205.1	hypothetical protein	-
SPSINT_RS06470	-	1339730..1339924 (-)	195	WP_049770177.1	SAV1978 family virulence-associated passenger protein	-
SPSINT_RS06475 (SPSINT_1279)	-	1339957..1340208 (-)	252	WP_015729206.1	hypothetical protein	-
SPSINT_RS06480 (SPSINT_1280)	-	1340358..1340564 (-)	207	WP_015729207.1	hypothetical protein	-
SPSINT_RS06490 (SPSINT_1281)	-	1340728..1341510 (-)	783	WP_015729208.1	ATP-binding protein	-
SPSINT_RS06495 (SPSINT_1282)	-	1341525..1342292 (-)	768	WP_049770167.1	DnaD domain-containing protein	-
SPSINT_RS06500 (SPSINT_1283)	-	1342341..1343060 (-)	720	WP_015729210.1	hypothetical protein	-
SPSINT_RS06505 (SPSINT_1284)	-	1343076..1343483 (-)	408	WP_015729211.1	hypothetical protein	-
SPSINT_RS06510 (SPSINT_1285)	ssbA	1343498..1343959 (-)	462	WP_015729212.1	single-stranded DNA-binding protein	Machinery gene
SPSINT_RS06515 (SPSINT_1286)	-	1343952..1344596 (-)	645	WP_015729213.1	MBL fold metallo-hydrolase	-
SPSINT_RS06520 (SPSINT_1287)	-	1344659..1345573 (-)	915	WP_015729214.1	RecT family recombinase	-
SPSINT_RS13445 (SPSINT_1288)	-	1345587..1345787 (-)	201	WP_015729215.1	helix-turn-helix domain-containing protein	-
SPSINT_RS06530 (SPSINT_1289)	-	1345781..1347727 (-)	1947	WP_015729216.1	AAA family ATPase	-
SPSINT_RS06535 (SPSINT_1290)	-	1347740..1348000 (-)	261	WP_015729217.1	DUF1108 family protein	-
SPSINT_RS06540 (SPSINT_1291)	-	1348087..1348383 (-)	297	WP_015729218.1	DUF2482 family protein	-
SPSINT_RS13005 (SPSINT_1292)	-	1348385..1348561 (-)	177	WP_015729219.1	hypothetical protein	-
SPSINT_RS06545 (SPSINT_1293)	-	1348576..1348839 (-)	264	WP_015729220.1	helix-turn-helix domain-containing protein	-

Sequence

Protein

• Length: 153 a.a.
• Molecular weight: 16828.69 Da
• Isoelectric Point: 6.7120

>NTDB_id=39513 SPSINT_RS06510 WP_015729212.1 1343498..1343959(-) (ssbA) [Staphylococcus pseudintermedius HKU10-03]
MINRVVLVGRLTKNPELRHTPNGISVSSFTLAVNRTFTNAKGEREADFINCIAFKKTAENINNYLSKGSLAGIDGHLQSR
SYENKEGQRVYVTEVICESVQFLESKSTNSNQSQGGIASGQYQPKANHVAATSQNPFVNMNDSIDISDDDLPF

Nucleotide

• Length: 462 bp

>NTDB_id=39513 SPSINT_RS06510 WP_015729212.1 1343498..1343959(-) (ssbA) [Staphylococcus pseudintermedius HKU10-03]
ATGATTAATAGAGTTGTACTTGTAGGAAGATTAACTAAAAATCCTGAATTAAGACATACACCAAATGGAATAAGTGTTAG
CAGTTTCACACTCGCTGTAAATCGTACATTTACGAATGCAAAAGGTGAACGTGAAGCGGATTTTATTAACTGTATTGCCT
TTAAAAAAACAGCAGAGAACATTAATAACTACTTATCAAAAGGAAGTTTAGCAGGTATTGATGGTCACTTACAATCACGT
AGTTATGAAAATAAAGAGGGACAACGCGTATATGTCACTGAAGTAATTTGTGAAAGTGTTCAGTTTCTTGAAAGCAAATC
TACTAATAGCAATCAATCACAAGGCGGTATAGCATCCGGACAATATCAACCAAAAGCAAATCATGTCGCTGCTACAAGTC
AAAATCCATTTGTTAATATGAATGATTCAATTGATATTAGTGACGACGATTTACCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	54.07	100	0.608
ssb	Latilactobacillus sakei subsp. sakei 23K	54.118	100	0.601
ssbB	Bacillus subtilis subsp. subtilis str. 168	57.547	69.281	0.399