Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   GD578_RS01140 Genome accession   NZ_CP045560
Coordinates   241308..242729 (-) Length   473 a.a.
NCBI ID   WP_002048902.1    Uniprot ID   A0AB37CS01
Organism   Acinetobacter nosocomialis strain AC1530     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 236308..247729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GD578_RS01125 (GD578_01130) lptG 237361..238431 (+) 1071 WP_002048976.1 LPS export ABC transporter permease LptG -
  GD578_RS01130 (GD578_01135) gpmI 238557..240104 (+) 1548 WP_002048914.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  GD578_RS01135 (GD578_01140) - 240120..241304 (+) 1185 WP_002048911.1 S41 family peptidase -
  GD578_RS01140 (GD578_01145) pilR 241308..242729 (-) 1422 WP_002048902.1 sigma-54 dependent transcriptional regulator Regulator
  GD578_RS01145 (GD578_01150) pilS 242753..244321 (-) 1569 WP_025467730.1 PAS domain-containing sensor histidine kinase Regulator
  GD578_RS01150 (GD578_01155) - 244332..244967 (-) 636 WP_000633799.1 response regulator -
  GD578_RS01155 (GD578_01160) pbpG 245179..246225 (+) 1047 WP_031951071.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  GD578_RS01160 (GD578_01165) thrC 246333..247472 (-) 1140 WP_002048893.1 threonine synthase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53098.32 Da        Isoelectric Point: 6.6688

>NTDB_id=395121 GD578_RS01140 WP_002048902.1 241308..242729(-) (pilR) [Acinetobacter nosocomialis strain AC1530]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLDLVKHVSQNYTNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQVHLDQLLQKALNRQKAEHDFAESALENKLLIGRSLPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLMLPPLRERGEDVLL
LANHFIQKICMEWETPLKQLTEAAETYLLQQHFPGNVRELRNMIERAITLSDDANIDVPHLHPAPLRANISNSIATVSQS
LQNPVATPQIVKKLPSEGLERYLESIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=395121 GD578_RS01140 WP_002048902.1 241308..242729(-) (pilR) [Acinetobacter nosocomialis strain AC1530]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTTTTAATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACACAGTTTCATTACGATGCATGTT
TAACCGATTTAAACCTACCCGATGGAAGTGGGTTAGATTTAGTCAAACATGTCTCTCAAAATTACACCAACACACCCATT
GCGGTTTTAACTGCCTACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCAGGTGCTTTTGATTTTGTAAGCAAACC
CATCAACCAAGTACATCTAGATCAGTTATTACAGAAAGCCTTGAATCGGCAAAAAGCAGAGCATGATTTTGCCGAGAGTG
CTTTAGAAAACAAATTATTAATCGGTCGTTCTCTACCTATTCAACAATTACGCATCGCAATTAAAAAAATTGCTCGCTCT
CAAGCACCAGTATTTGTTACGGGTGAGTCTGGAACAGGTAAAGAAGTCGTTGCTAACCTAGTTCATCGACTGAGCAACCG
TAGTGAAGGTCCTTTTATTGCGATTAACTGCGGCGCTATTCCAACCGAACTCATGGAAAGTGAGCTGTTTGGGCATAAAA
AAGGTAGCTTTACTGGAGCCACGCAAGACAAACAAGGCCTAATTTTATCGGCTCATGGCGGTAGTTTATTTTTAGATGAA
ATTGCCGAATTACCATTGAGTATGCAGGTTAAACTGCTCCGTGCGGTACAAGAAAAAAAGATCCGTCCTGTCGGTTCCGA
TCAGGAAATTGATGTTGATTTTCGGGTAATTAGTGCAAGTCATCAAGACTTAGATTTATTGGTTAGACAAGGCAAATTCC
GTCAGGATTTATTCTTCCGTATCCATGTTATGGATCTCATGTTACCGCCTTTACGCGAACGTGGTGAAGATGTCTTGTTA
CTTGCGAATCACTTTATTCAGAAAATTTGTATGGAGTGGGAAACCCCACTTAAACAATTAACTGAGGCTGCTGAAACTTA
TCTGCTACAACAACACTTTCCCGGCAATGTTCGCGAATTAAGAAATATGATTGAGCGAGCAATTACTTTAAGTGACGATG
CCAATATTGATGTACCGCATTTGCACCCAGCCCCTTTAAGAGCAAATATTTCTAATTCAATCGCAACGGTATCTCAAAGC
TTGCAGAATCCCGTAGCTACGCCACAGATTGTAAAAAAATTACCAAGTGAGGGTCTAGAACGTTATTTAGAAAGTATTGA
AAAAGATATCTTGCTCAATGCACTCAATATGACCCATTGGAACAGAACTTTAGCAGCTAAAAAACTAGGAATGACGTTTC
GTTCTTTACGCTATCGTTTGAAGAAATTTGGATTAGATACTGAAACTGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

95.137

100

0.951
  pilR Pseudomonas aeruginosa PAK

50.109

97.04

0.486

Multiple sequence alignment