Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   GD578_RS01145 Genome accession   NZ_CP045560
Coordinates   242753..244321 (-) Length   522 a.a.
NCBI ID   WP_025467730.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain AC1530     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 237753..249321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GD578_RS01130 (GD578_01135) gpmI 238557..240104 (+) 1548 WP_002048914.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  GD578_RS01135 (GD578_01140) - 240120..241304 (+) 1185 WP_002048911.1 S41 family peptidase -
  GD578_RS01140 (GD578_01145) pilR 241308..242729 (-) 1422 WP_002048902.1 sigma-54 dependent transcriptional regulator Regulator
  GD578_RS01145 (GD578_01150) pilS 242753..244321 (-) 1569 WP_025467730.1 PAS domain-containing sensor histidine kinase Regulator
  GD578_RS01150 (GD578_01155) - 244332..244967 (-) 636 WP_000633799.1 response regulator -
  GD578_RS01155 (GD578_01160) pbpG 245179..246225 (+) 1047 WP_031951071.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  GD578_RS01160 (GD578_01165) thrC 246333..247472 (-) 1140 WP_002048893.1 threonine synthase -
  GD578_RS01165 (GD578_01170) - 247528..248829 (-) 1302 WP_002048970.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 58971.33 Da        Isoelectric Point: 6.6632

>NTDB_id=395122 GD578_RS01145 WP_025467730.1 242753..244321(-) (pilS) [Acinetobacter nosocomialis strain AC1530]
MHSPLNSSLSHTIFRLGTWYGLYRLIIAVSLTIILVSTNAQTDNSLQHPALYFYTLLGYSLLSLVQLLGFKLVATQATRQ
LALFFIVDVICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLIITLLAIIAVIYQRFVGSLFDYSNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVVSNPAACSLLGIPPQFANE
KYPLAKWHADLFEILKFGDLQEGDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDPEQQNTLRHMIGKQTKRIDSIVQDTLGLARSERTHPIQIDLNYFINTLLDEDLSDVK
HSIQLKISDRSLKFLFDEKQLRQVMINLVRNALRHNAPDSPNVMINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=395122 GD578_RS01145 WP_025467730.1 242753..244321(-) (pilS) [Acinetobacter nosocomialis strain AC1530]
ATGCACTCTCCTTTAAATTCATCCCTGTCCCATACGATTTTTCGTTTGGGCACTTGGTATGGTTTATACCGTCTTATTAT
TGCGGTTAGCCTGACTATTATTTTGGTTTCAACCAATGCTCAAACCGACAATAGTTTGCAGCACCCTGCTTTATATTTCT
ACACACTACTCGGCTATTCGCTCTTAAGCCTTGTCCAGTTGTTAGGCTTTAAATTGGTTGCGACTCAAGCAACACGTCAG
CTTGCTTTATTTTTTATTGTCGATGTTATTTGTTTGAGTTTACTGACTTTTTCTGTTGGTGAACCAAATTTACAGCTTAG
TCTACTTTATGTAATTGCAATCTTTACCTCGGCAATTTTGCTCAGCGCAAGAATGTCTTTGATCATTACCTTACTTGCGA
TCATTGCGGTTATTTACCAGCGCTTCGTGGGTAGTTTGTTCGACTACAGCAATCTAAACACGATCGGTAATAGTGCACTA
CTGGCCTTCTTATTTTTTGTAGTACACGGAATCGGACAAATTGCGGTCCAGCGCTTTAAATTACTTGAAGCACTCACCTT
TCACCAATCAATAGAACTCTATCAACTACAAAATATTAACCGTTATATCTTAGAACAAATCGAAGAAGGCTATTTAGTTT
TAGATGAAAACTACGACATCGTTGTCAGTAATCCGGCCGCTTGCTCACTGCTTGGCATTCCTCCCCAGTTTGCCAATGAA
AAATATCCTTTGGCTAAATGGCATGCTGATTTATTTGAAATATTGAAGTTTGGTGACTTACAAGAAGGTGATCGATTTAT
TTTTGAGTCTCGGCTATCAGCCTATTCTATTAATATTAAAGTGCAGCATCTTTTAGTTCCGCAACAAGCGCTAACACTGC
TTATTTTACAAGATGCCCAGCAAATTAATCAGCAAGCACAGCAGCTCAAACTTGCCGCTTTAGGGCAACTCTCAGCAAGT
ATTGCACATGAAATTCGCAATCCCCTTGCTGCAATTGTTCAAGCAAATGAGCTACTTAAAGACAGCGACCCAGAACAACA
AAATACTTTACGCCATATGATTGGCAAACAGACCAAACGCATTGATAGTATTGTTCAAGACACCTTAGGACTTGCTCGTA
GTGAAAGAACACACCCCATTCAGATTGACTTAAACTACTTTATAAATACATTACTCGATGAAGATTTATCTGACGTTAAG
CATTCAATTCAGCTCAAAATTTCTGATCGTTCTTTAAAATTTTTATTTGACGAAAAACAATTAAGACAAGTCATGATCAA
TCTGGTGCGAAATGCTCTACGGCACAATGCACCCGACTCACCGAATGTCATGATCAACATTCATTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATACTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACCTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

94.636

100

0.946

Multiple sequence alignment