Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   GEV39_RS17450 Genome accession   NZ_CP045554
Coordinates   3790246..3792462 (-) Length   738 a.a.
NCBI ID   WP_173890707.1    Uniprot ID   -
Organism   Pseudomonas sp. NY5710     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3785246..3797462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEV39_RS17420 (GEV39_17905) - 3786227..3786691 (-) 465 WP_173890705.1 low molecular weight protein-tyrosine-phosphatase -
  GEV39_RS17425 (GEV39_17910) kdsB 3786691..3787455 (-) 765 WP_054905782.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GEV39_RS17430 (GEV39_17915) - 3787452..3787637 (-) 186 WP_003247142.1 Trm112 family protein -
  GEV39_RS17435 (GEV39_17920) lpxK 3787681..3788682 (-) 1002 WP_173890706.1 tetraacyldisaccharide 4'-kinase -
  GEV39_RS17440 (GEV39_17925) - 3788682..3789116 (-) 435 WP_012271149.1 biopolymer transporter ExbD -
  GEV39_RS17445 (GEV39_17930) exbB 3789113..3789748 (-) 636 WP_009685211.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  GEV39_RS17450 (GEV39_17940) comA 3790246..3792462 (-) 2217 WP_173890707.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GEV39_RS17455 (GEV39_17945) - 3792605..3793117 (+) 513 Protein_3439 DUF2062 domain-containing protein -
  GEV39_RS17460 (GEV39_17950) - 3793121..3793900 (-) 780 WP_009681883.1 ABC transporter permease -
  GEV39_RS17465 (GEV39_17955) - 3793897..3794829 (-) 933 WP_173890709.1 ABC transporter ATP-binding protein -
  GEV39_RS17470 (GEV39_17960) - 3794976..3795599 (-) 624 WP_173890710.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79607.26 Da        Isoelectric Point: 9.6403

>NTDB_id=395083 GEV39_RS17450 WP_173890707.1 3790246..3792462(-) (comA) [Pseudomonas sp. NY5710]
MRTGMLALALGLLCLGFLPALPPDGWLWVLAACAGVCLFTRGWPLGCFLLGLCWASWSAQQAVDDRLAAALDGRTLWLEG
RVVGLPARTAHGVRFELEAARSRRAELPQRLQVSWFDGPPVRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPASYGWRDSLRQRLLAVDANGRQAALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPSACALAMGAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGAFLPLLLALVAVLLVEPL
AALLPGFWLSFGAVATLVFCFSARLGAWRPWQAWTRAQWVIAIGLLPVLLAVGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLLLPLGGAGEALLWLAGGLLDVLFQVLALVAQQRPAWVPPALPLWAWLLVCLGALLVLLPRGVPLRGLGGVMLLALW
VPREPVPFGQVEVWQLDVGQGLAVLLRTRHHNLLYDAGPARGDYDLGERVVLPTLRKLGVSHLDVMLISHAHADHAGGAG
AIQRGLPVERVIGGEALDDVQLQPCASGEQWEWDGVRFSLWRWADGRSSNDRSCVLLVEEAQGERLLLAGDMEAGAERAW
LAATDAPRIDWLQSPHHGSRSSSSEMFMRATAPRGVLISRGRNNSFGHPHAQVVERYRRHGVVVHDTAVQGALRLVLGGW
GEVEGMRGQRRFWRGRGE

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=395083 GEV39_RS17450 WP_173890707.1 3790246..3792462(-) (comA) [Pseudomonas sp. NY5710]
ATGCGCACAGGGATGTTGGCGCTTGCGCTCGGGCTGCTGTGCCTGGGCTTTCTTCCTGCATTGCCACCGGACGGGTGGTT
GTGGGTGCTGGCGGCTTGCGCTGGCGTCTGCCTGTTCACCCGCGGGTGGCCATTGGGCTGTTTTCTGTTGGGGCTGTGCT
GGGCCAGCTGGTCTGCCCAGCAGGCCGTGGATGACCGCCTGGCGGCCGCTTTGGATGGCCGCACCTTGTGGCTGGAGGGG
CGGGTGGTCGGTTTGCCGGCGCGCACTGCGCACGGTGTGCGTTTCGAGCTGGAGGCCGCCCGTTCGCGCCGTGCCGAATT
GCCGCAACGCCTGCAGGTCAGCTGGTTCGACGGGCCGCCGGTTCGGGCTGGCGAGCAGTGGCGGCTGGCAGTGACCTTGC
AGCGCCCGGCAGGGTTGTTGAACCCGCATGGGCCGGACCGTGAAGCGCAGCTGCTGGCCCGGCGGGTCGGTGCTACCGGT
ACGGTGAAGGCGGGGCAACTGCTGGCGCCGGCCAGCTATGGGTGGCGGGACTCGCTGCGCCAGCGCTTGCTGGCGGTCGA
TGCCAACGGCCGGCAGGCCGCGCTAGTGGCCCTGGTGCTCGGCGACGGGGCCGGTCTTGCGCGGGAAGATTGGCAGACGT
TGCAGGCCACCGGCACGGTGCACTTGTTGGTGATTTCCGGCCAGCACATTGGCTTGGTCGCCGGTTTGCTCTATGGCCTG
GTCGCCGGGTTGGCCCGCTGGGGGCTGTGGCCCGCGCGTCTGCCATGGCTGCCCTCGGCCTGCGCGCTGGCCATGGGGGC
GGCACTGGCCTACGGCTGGCTGGCCGGCGCGGGGGTGCCGGTACAGCGTGCCTGCCTGATGCTGGCCGTGGTGTTGCTGT
GGCGGTTGCGTTTTCGGCACCTGGGGGCGTTCCTGCCACTGTTGCTGGCGCTGGTGGCCGTGTTGCTGGTCGAGCCGCTG
GCGGCACTGCTTCCGGGCTTCTGGCTGTCGTTCGGCGCCGTGGCCACGCTGGTGTTTTGCTTCAGTGCCCGCCTGGGGGC
ATGGCGGCCATGGCAAGCCTGGACGCGGGCGCAGTGGGTGATTGCCATCGGTTTGTTGCCGGTGCTCCTGGCTGTGGGCT
TGCCGGTGAGCCTGAGTGCGCCGCTGGCCAACCTGGTGGCGGTGCCCTGGGTGAGCCTGGCGGTACTGCCGTTGGCCTTG
CTGGGTACCTTGCTGTTGCCGTTGGGTGGGGCTGGGGAGGCCTTGTTGTGGCTGGCAGGTGGCTTGCTGGATGTGCTGTT
TCAGGTGCTGGCGCTGGTTGCGCAGCAACGCCCGGCATGGGTGCCGCCAGCCCTGCCGCTATGGGCCTGGCTGCTGGTCT
GCCTGGGGGCTTTGCTGGTGCTGCTGCCCCGTGGCGTGCCGCTGCGAGGGTTGGGCGGGGTGATGCTGTTGGCCCTCTGG
GTGCCCCGCGAGCCGGTGCCTTTCGGGCAGGTGGAGGTCTGGCAACTGGACGTCGGCCAAGGCTTGGCGGTGCTGTTGCG
CACCCGGCATCACAACCTGCTGTATGACGCCGGGCCGGCGAGGGGCGACTACGACCTGGGGGAGCGGGTGGTGTTGCCGA
CCTTGCGCAAGTTGGGGGTGAGTCACCTGGACGTGATGCTCATCAGCCATGCCCACGCCGATCATGCCGGCGGTGCTGGG
GCGATACAGCGGGGTTTGCCGGTCGAGCGGGTTATCGGTGGGGAAGCGCTGGATGATGTTCAGTTGCAACCTTGTGCCAG
TGGCGAGCAATGGGAATGGGATGGCGTGCGTTTTTCGCTGTGGCGCTGGGCGGATGGGCGCAGCAGTAATGACCGCTCCT
GTGTGTTGCTGGTCGAGGAGGCGCAGGGGGAACGGTTGTTGCTCGCCGGCGACATGGAAGCGGGGGCGGAGCGTGCCTGG
CTGGCGGCGACCGACGCGCCACGCATTGACTGGCTGCAGTCGCCGCACCATGGCAGCCGCAGTTCTTCCAGCGAGATGTT
CATGCGTGCCACGGCGCCGCGTGGGGTGCTGATATCGCGGGGGCGCAACAATAGTTTTGGGCACCCGCATGCGCAGGTGG
TGGAGCGGTACCGGCGGCATGGGGTGGTGGTGCATGACACGGCGGTGCAGGGGGCTTTGCGGTTGGTGTTGGGCGGGTGG
GGGGAGGTTGAGGGGATGCGGGGGCAGCGGCGGTTCTGGCGGGGTCGGGGGGAGTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-668)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.564

98.103

0.575
  comA Ralstonia pseudosolanacearum GMI1000

35.501

100

0.37

Multiple sequence alignment