Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   GEV39_RS17445 Genome accession   NZ_CP045554
Coordinates   3789113..3789748 (-) Length   211 a.a.
NCBI ID   WP_009685211.1    Uniprot ID   A0A7W2QUJ4
Organism   Pseudomonas sp. NY5710     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3784113..3794748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEV39_RS17415 (GEV39_17900) murB 3785211..3786230 (-) 1020 WP_173890704.1 UDP-N-acetylmuramate dehydrogenase -
  GEV39_RS17420 (GEV39_17905) - 3786227..3786691 (-) 465 WP_173890705.1 low molecular weight protein-tyrosine-phosphatase -
  GEV39_RS17425 (GEV39_17910) kdsB 3786691..3787455 (-) 765 WP_054905782.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GEV39_RS17430 (GEV39_17915) - 3787452..3787637 (-) 186 WP_003247142.1 Trm112 family protein -
  GEV39_RS17435 (GEV39_17920) lpxK 3787681..3788682 (-) 1002 WP_173890706.1 tetraacyldisaccharide 4'-kinase -
  GEV39_RS17440 (GEV39_17925) - 3788682..3789116 (-) 435 WP_012271149.1 biopolymer transporter ExbD -
  GEV39_RS17445 (GEV39_17930) exbB 3789113..3789748 (-) 636 WP_009685211.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  GEV39_RS17450 (GEV39_17940) comA 3790246..3792462 (-) 2217 WP_173890707.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GEV39_RS17455 (GEV39_17945) - 3792605..3793117 (+) 513 Protein_3439 DUF2062 domain-containing protein -
  GEV39_RS17460 (GEV39_17950) - 3793121..3793900 (-) 780 WP_009681883.1 ABC transporter permease -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22855.16 Da        Isoelectric Point: 7.3616

>NTDB_id=395082 GEV39_RS17445 WP_009685211.1 3789113..3789748(-) (exbB) [Pseudomonas sp. NY5710]
MWELVKSGGWMMLPIILSSIAAMAIVIERLWTLRASRVTPPHLLGQVWIWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGTQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=395082 GEV39_RS17445 WP_009685211.1 3789113..3789748(-) (exbB) [Pseudomonas sp. NY5710]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCAT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGCGTCACCCCGCCACACTTGCTCGGCCAGGTCTGGATATGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCGCTGCGCGCCGATTCGCCACTGGGTGAAATCCTCGCCGCGGGCCTGGCCAAT
TCGCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAAGAGGCGGCTTCGCGCGTCATTCACGAGCTGGAGCGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GTGCCTTCATGGGCACGCAGATGACCGCCAACGCCGCGGTACTGGCCGGTGGTATTTCCAAGGCCCTGGTCACCACGGCG
GCGGGCCTGATGGTTGGTATTCCGGCGGTGTTCTTCCACCGTTTCCTGCTGCGCCGCATCGATGAACTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGCTGCAGGGCGACCGCGAAGTGGAAGTGGCTGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W2QUJ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.991

100

0.82

Multiple sequence alignment