Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   GEV38_RS08430 Genome accession   NZ_CP045553
Coordinates   1770831..1773044 (+) Length   737 a.a.
NCBI ID   WP_054573477.1    Uniprot ID   -
Organism   Pseudomonas sp. 13159349     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1765831..1778044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEV38_RS08410 (GEV38_08745) - 1767696..1768319 (+) 624 WP_015269396.1 glutathione S-transferase -
  GEV38_RS08415 (GEV38_08750) - 1768464..1769396 (+) 933 WP_013971560.1 ABC transporter ATP-binding protein -
  GEV38_RS08420 (GEV38_08755) - 1769393..1770172 (+) 780 WP_015269397.1 ABC transporter permease -
  GEV38_RS08425 (GEV38_08760) - 1770182..1770688 (-) 507 Protein_1653 DUF2062 domain-containing protein -
  GEV38_RS08430 (GEV38_08765) comA 1770831..1773044 (+) 2214 WP_054573477.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GEV38_RS08435 (GEV38_08770) exbB 1773458..1774093 (+) 636 WP_051099753.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  GEV38_RS08440 (GEV38_08775) - 1774090..1774524 (+) 435 WP_054572823.1 biopolymer transporter ExbD -
  GEV38_RS08445 (GEV38_08780) lpxK 1774524..1775525 (+) 1002 WP_054572822.1 tetraacyldisaccharide 4'-kinase -
  GEV38_RS08450 (GEV38_08785) - 1775570..1775755 (+) 186 WP_011532874.1 Trm112 family protein -
  GEV38_RS08455 (GEV38_08790) kdsB 1775752..1776516 (+) 765 WP_054572821.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GEV38_RS08460 (GEV38_08795) - 1776516..1776980 (+) 465 WP_003259973.1 low molecular weight protein-tyrosine-phosphatase -
  GEV38_RS08465 (GEV38_08800) murB 1776977..1777996 (+) 1020 WP_054572820.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79781.81 Da        Isoelectric Point: 10.3449

>NTDB_id=395055 GEV38_RS08430 WP_054573477.1 1770831..1773044(+) (comA) [Pseudomonas sp. 13159349]
MRTGMFALALGLLCLGFLPGLPSVGWLVLLAVAGGIGLFTRLWPLGCFLLGLCWACWSAQQALDDRLATGLDGRTLWLEG
RVVGLPTRTAQGVRFELDAARSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVVGGWRDTLRQRLLAVEANGRQTALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGGGVPVQRACLMLAVVLLWRLRFRQLGANLPLLLALIAVLLVEPL
AALLPGFWLSFAAVATLVYCFSARLGSWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLLLPLGGVGEALLWLAGGLLDVLFRLLELVAQQQSAWLPAVLPLWAWLLVCLGTLLVLMPRGVPLRGLGGVMLLALW
VPRETVPFGQVEVWQLDVGQGLAVLLRTRHHNLLYDAGPARGESDLGERVVLPTLRKLGVGSLDLMLVSHAHADHAGGAG
AIMRGLPVERVIGGELLDDLQLQPCVSGEQWMWDGVRFSMWRWADGQSSNDRSCVLLVEAQGERLLLAGDMEAGAERAWL
AATEAPRIDWLQSPHHGSRSSSSEAFIRATAPRGVLISRGRNNSFGHPHVQVVERYRRHGVVMHDTAEQGALRLVLGRLG
EVEGVRGQRRFWRVRVQ

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=395055 GEV38_RS08430 WP_054573477.1 1770831..1773044(+) (comA) [Pseudomonas sp. 13159349]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTTTCTCCCCGGATTGCCATCGGTCGGATGGCT
GGTGCTGCTGGCTGTAGCCGGTGGCATCGGCCTGTTTACCCGGCTGTGGCCACTGGGCTGTTTTCTGTTGGGCCTGTGTT
GGGCCTGCTGGTCTGCGCAGCAGGCGCTGGATGACCGCCTGGCAACCGGGCTGGATGGCCGCACCTTGTGGCTTGAGGGC
CGGGTGGTCGGCCTGCCGACCCGGACTGCGCAGGGTGTGCGCTTCGAGCTGGACGCGGCCCGCTCGCGGCGGGCAGAGCT
GCCGCAGCGCCTGCAACTGAGCTGGTTCGACGGCCCGCCGCTGCGCGCGGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AGCGCCCGGCCGGGCTGCTCAACCCGCATGGACCGGACCGTGAGGCGCAATTGCTGGCGCGGCGGGTCGGTGCGACCGGT
ACGGTCAAGGCCGGGCAGTTGCTGGCGCCGGTTGTCGGCGGCTGGCGCGACACGCTGCGCCAGCGCCTGCTGGCAGTCGA
GGCCAATGGCCGGCAGACAGCGTTGGTGGCGCTGGTGCTTGGCGACGGGGCGGGCCTGGCCCGGGAGGACTGGCAAACGT
TGCAGGCCACCGGCACGGTGCACTTGCTGGTGATCTCTGGCCAGCACATCGGCCTGGTTGCCGGCTTGCTGTATGGCCTG
GTTGCCGGGCTGGCGCGTTGGGGGCTGTGGCCCGCTCGGTTGCCGTGGCTGCCCTGGGCGTGTGGCTTGGCCATGGCTGC
GGCACTGGCCTACGGTTGGTTGGCTGGTGGCGGTGTACCGGTGCAGCGTGCCTGCCTGATGCTGGCCGTGGTGTTGCTCT
GGCGCCTGCGTTTTCGCCAACTGGGTGCGAACTTACCGTTGTTGCTGGCGCTGATTGCCGTACTGTTGGTGGAGCCGTTG
GCCGCGCTGCTGCCCGGGTTCTGGCTGTCGTTCGCGGCCGTGGCCACGCTTGTCTATTGCTTCAGTGCCCGCCTGGGCAG
CTGGCGGCCCTGGCAGGCCTGGACGCGGGCGCAATGGGTGATTGCGATCGGCTTGCTGCCGGTACTGCTGGCTACGGGCT
TGCCGGTGAGCTTGAGTGCGCCGCTGGCCAACCTTGTTGCGGTGCCCTGGGTCAGCCTGGCCGTGCTGCCATTGGCATTG
CTGGGCACTTTGCTGCTGCCGTTGGGCGGGGTAGGGGAGGCACTGCTCTGGCTGGCGGGAGGTTTGCTCGATGTGCTCTT
CCGGCTGCTGGAGTTGGTGGCGCAACAGCAGTCGGCGTGGCTGCCAGCAGTTCTGCCGTTGTGGGCCTGGCTGCTGGTGT
GCCTGGGTACGTTGCTGGTTTTGATGCCCCGTGGCGTACCACTGCGCGGGTTGGGTGGCGTAATGCTGCTGGCGCTGTGG
GTACCCCGGGAGACGGTGCCGTTCGGCCAGGTCGAGGTCTGGCAGCTGGACGTCGGCCAGGGGCTGGCAGTGCTTTTGCG
CACCCGGCATCACAACCTGCTGTACGACGCCGGGCCGGCCAGGGGCGAGAGCGACCTGGGCGAGCGGGTGGTGTTGCCGA
CCTTGCGCAAGCTGGGGGTGGGCAGCCTGGACCTGATGCTGGTCAGCCACGCCCATGCCGACCACGCCGGTGGTGCTGGC
GCAATCATGCGTGGCCTGCCGGTCGAACGGGTGATCGGCGGCGAATTGCTGGATGACCTGCAACTGCAACCTTGCGTAAG
TGGCGAGCAGTGGATGTGGGATGGCGTGCGCTTTTCGATGTGGCGCTGGGCCGATGGGCAGAGCAGCAATGACCGCTCCT
GTGTGTTGTTGGTCGAGGCGCAGGGTGAGCGGTTGTTGCTGGCGGGAGACATGGAGGCCGGTGCCGAACGGGCCTGGCTG
GCGGCCACGGAAGCACCGCGGATCGACTGGTTGCAGTCGCCGCATCACGGCAGCCGCAGTTCGTCCAGCGAGGCCTTCAT
CCGCGCCACGGCGCCGCGCGGGGTACTGATTTCGCGGGGGCGCAACAACAGCTTCGGGCACCCGCATGTGCAGGTGGTCG
AACGTTATCGGCGGCATGGGGTGGTGATGCATGACACGGCGGAGCAGGGGGCGTTGCGGTTGGTGCTGGGGAGGCTGGGG
GAGGTGGAGGGTGTGCGGGGGCAGAGGCGGTTTTGGCGGGTTCGGGTGCAGTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-462)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.306

97.693

0.579
  comA Ralstonia pseudosolanacearum GMI1000

35.422

100

0.376

Multiple sequence alignment