Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   GEV38_RS08435 Genome accession   NZ_CP045553
Coordinates   1773458..1774093 (+) Length   211 a.a.
NCBI ID   WP_051099753.1    Uniprot ID   A0A0E9ZJ72
Organism   Pseudomonas sp. 13159349     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1768458..1779093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEV38_RS08415 (GEV38_08750) - 1768464..1769396 (+) 933 WP_013971560.1 ABC transporter ATP-binding protein -
  GEV38_RS08420 (GEV38_08755) - 1769393..1770172 (+) 780 WP_015269397.1 ABC transporter permease -
  GEV38_RS08425 (GEV38_08760) - 1770182..1770688 (-) 507 Protein_1653 DUF2062 domain-containing protein -
  GEV38_RS08430 (GEV38_08765) comA 1770831..1773044 (+) 2214 WP_054573477.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GEV38_RS08435 (GEV38_08770) exbB 1773458..1774093 (+) 636 WP_051099753.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  GEV38_RS08440 (GEV38_08775) - 1774090..1774524 (+) 435 WP_054572823.1 biopolymer transporter ExbD -
  GEV38_RS08445 (GEV38_08780) lpxK 1774524..1775525 (+) 1002 WP_054572822.1 tetraacyldisaccharide 4'-kinase -
  GEV38_RS08450 (GEV38_08785) - 1775570..1775755 (+) 186 WP_011532874.1 Trm112 family protein -
  GEV38_RS08455 (GEV38_08790) kdsB 1775752..1776516 (+) 765 WP_054572821.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GEV38_RS08460 (GEV38_08795) - 1776516..1776980 (+) 465 WP_003259973.1 low molecular weight protein-tyrosine-phosphatase -
  GEV38_RS08465 (GEV38_08800) murB 1776977..1777996 (+) 1020 WP_054572820.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22860.11 Da        Isoelectric Point: 7.3616

>NTDB_id=395056 GEV38_RS08435 WP_051099753.1 1773458..1774093(+) (exbB) [Pseudomonas sp. 13159349]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=395056 GEV38_RS08435 WP_051099753.1 1773458..1774093(+) (exbB) [Pseudomonas sp. 13159349]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGTCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCACTGGGCGAAATCCTTGCCGCCGGTCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAGGAATGCATCGAGGAGGCCGCTTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCTCCGCTGTTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCGGTGTTGGCCGGTGGTATCTCCAAAGCCCTGGTCACCACCGCG
GCCGGCCTGATGGTTGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCAGCGCCGCATCGATGAGTTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTGGAGGTGATCCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E9ZJ72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825

Multiple sequence alignment