Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   HPY16_RS00950 Genome accession   NZ_CP053802
Coordinates   197342..199420 (-) Length   692 a.a.
NCBI ID   WP_175247920.1    Uniprot ID   -
Organism   Vibrio cholerae strain L6G     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 192342..204420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY16_RS00930 (HPY16_00930) greB 192661..193146 (+) 486 WP_175247917.1 transcription elongation factor GreB -
  HPY16_RS00935 (HPY16_00935) ompR 193465..194187 (+) 723 WP_000230023.1 two-component system response regulator OmpR -
  HPY16_RS00940 (HPY16_00940) envZ 194256..195572 (+) 1317 WP_175247918.1 two-component system sensor histidine kinase EnvZ -
  HPY16_RS00945 (HPY16_00945) - 195597..196997 (-) 1401 WP_175247919.1 uracil-xanthine permease family protein -
  HPY16_RS00950 (HPY16_00950) recG 197342..199420 (-) 2079 WP_175247920.1 ATP-dependent DNA helicase RecG Machinery gene
  HPY16_RS00955 (HPY16_00955) spoT 199538..201655 (-) 2118 WP_000280452.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  HPY16_RS00960 (HPY16_00960) rpoZ 201687..201959 (-) 273 WP_000135052.1 DNA-directed RNA polymerase subunit omega -
  HPY16_RS00965 (HPY16_00965) gmk 202067..202690 (-) 624 WP_000515793.1 guanylate kinase -
  HPY16_RS00970 (HPY16_00970) - 203058..203729 (+) 672 WP_001015358.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 76889.03 Da        Isoelectric Point: 7.5830

>NTDB_id=395017 HPY16_RS00950 WP_175247920.1 197342..199420(-) (recG) [Vibrio cholerae strain L6G]
MSQLLSAVPLSELSGVGAKVAEKLEKVGLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAAVQGKVMAVDTLFGKRKML
TVKISDGNGTLTLRFFNFTAAMKNNFAEGKFVHAYGEIKRGNQGLEIIHPDYKFFAPAQTPDVEPNLTPVYPTTEGLRQL
TLRNLTDQALALLEKSAVQELLPSGLYDQQMSLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLAIRS
QGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLEKPHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQVA
LMAPTELLAEQHALNFAQWLEPMGIQVGWLAGKLKGKARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHR
FGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHACLN
EGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVPN
ASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLFHAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQT
GLADFKIADLVRDQQLVPQVQRIARHIHERYPQNAQAIIDRWLGERDIYAKA

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=395017 HPY16_RS00950 WP_175247920.1 197342..199420(-) (recG) [Vibrio cholerae strain L6G]
ATGTCACAACTCCTCTCAGCCGTTCCTCTTAGTGAACTCTCCGGTGTCGGGGCCAAAGTCGCCGAAAAACTGGAGAAAGT
CGGTTTGCACACGGTGCAGGATCTGCTGTTTCATCTTCCGCTGCGTTATGAGGATCGCACTCGCGTTTATCCGATAGTGC
AACTGCACCACGGTTTATGGGCTGCGGTACAAGGCAAAGTGATGGCGGTGGATACCCTGTTTGGCAAACGCAAAATGCTC
ACCGTGAAAATCAGTGATGGTAATGGCACGCTGACGCTGCGTTTTTTTAACTTCACCGCGGCGATGAAAAACAACTTTGC
GGAAGGCAAATTTGTGCATGCTTATGGGGAGATCAAACGTGGCAATCAAGGCTTAGAGATCATCCATCCTGACTACAAAT
TCTTTGCTCCTGCACAAACACCCGATGTCGAACCGAACCTCACTCCGGTTTACCCAACCACTGAAGGCTTACGCCAACTC
ACCCTGCGTAATTTGACCGACCAAGCGTTGGCGCTGCTTGAGAAATCTGCGGTGCAAGAATTACTGCCGTCTGGGCTTTA
CGATCAGCAGATGAGCTTAGCCCAAGCGCTCAAAATCATTCATCGCCCTTCGGCGGATATCGATCTGCGCCTGTTTGAAC
AAGGGCGACATCCGGCGCAAGTTCGGCTAATCATGGAAGAGCTGCTGGCGCAGAATCTCTCGATGCTTGCGATTCGCAGT
CAAGGCCAGCAAGATGTGGCCTTGCCTCTGGCTCCTGTTCACCAGCTTAAACAGCAACTTTTAGCGCAACTGCCCTTTTC
ACCGACTAAGGCGCAGCAACGTGTGGTTGCCGAAATCGAAGCGGATTTAGAAAAACCACATCCTATGATGCGCTTAGTGC
AAGGTGATGTCGGCTCAGGCAAAACCTTAGTCGCAGCGCTTGCGGCAGTGCGGGCGATTGAGCATGGCTATCAAGTAGCC
TTGATGGCCCCCACCGAGCTGTTGGCCGAGCAGCACGCGCTCAATTTTGCGCAGTGGCTAGAGCCGATGGGCATTCAAGT
GGGGTGGCTCGCGGGTAAGCTTAAAGGCAAAGCGCGGGAAACGGAGCTGGCACGCATCGCCAGTGGCGAAGTGAAAATGG
TGGTCGGCACCCATGCACTGTTTCAAGAGCAAGTGTCGTTTGACCATCTAGCCTTGGTCATTATTGATGAGCAGCATCGC
TTCGGGGTACATCAGCGTTTAGAGCTGCGCGAGAAAGGCGCAAAACAAGGCGCGTACCCGCATCAGCTCATCATGACCGC
GACGCCCATTCCGCGCACATTAGCGATGACGGCTTATGCCGATTTGGAAACCTCGGTGATTGATGAGTTACCCCCCGGGC
GTACTCCGATTCAAACCGTAGCGATTCCGGATACCAAACGCGATGAGATTGTTGAGCGTATTCGCCACGCTTGCCTCAAC
GAAGGCAAGCAAGCGTATTGGGTGTGTACTTTGATTGATGAATCCGAAGTGCTGGAAGCACAAGCGGCCGCAGAAACGGC
AGAAGAACTGCAACGTAAACTTCCCGAAGTCAAAATCGGCTTAGTGCATGGCCGGATGAAACCCGCCGAGAAGCAAGCGG
TAATGCAAGCGTTTAAAAATAATGAGCTGCATCTGCTCGTCGCCACTACAGTGATTGAAGTGGGCGTGGATGTACCCAAT
GCCAGCTTGATGATCATTGAAAACCCCGAGCGTTTGGGGCTGGCTCAACTACACCAGCTACGCGGCCGAGTCGGGCGTGG
CACAGTTGCCAGCCACTGTGTGCTTCTATTTCATGCGCCATTGTCAAAAACCGCTCAAAAACGCTTAGGCGTTCTGCGTG
AAAGCAATGATGGCTTCGTCATCGCGCAGCGCGACTTGGAAATTCGTGGCCCCGGAGAGCTACTGGGTACCAAACAAACC
GGCTTGGCCGATTTCAAAATTGCCGATCTGGTACGCGATCAGCAACTGGTTCCGCAAGTGCAACGCATCGCGCGACATAT
CCATGAACGCTACCCACAAAATGCACAAGCCATCATCGACCGCTGGTTAGGCGAACGTGATATTTACGCCAAAGCTTAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(479-587)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-674)

RecG wedge domain (RecG_wedge)

(15-171)

DEAD/DEAH box helicase (DEAD)

(271-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.744

97.11

0.493
  recG/mmsA Streptococcus pneumoniae R6

39.851

96.821

0.386
  recG/mmsA Streptococcus pneumoniae R36A

39.851

96.821

0.386
  recG Bacillus subtilis subsp. subtilis str. 168

39.478

94.075

0.371