Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   GAY96_RS12055 Genome accession   NZ_CP045550
Coordinates   2567946..2568329 (-) Length   127 a.a.
NCBI ID   WP_228345249.1    Uniprot ID   A0A9E8JQC4
Organism   Venatoribacter cucullus strain ASxS5     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2562946..2573329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GAY96_RS12035 (GAY96_11970) - 2563969..2564859 (-) 891 WP_228345245.1 CheR family methyltransferase -
  GAY96_RS12040 (GAY96_11975) - 2564887..2566938 (-) 2052 WP_228345246.1 methyl-accepting chemotaxis protein -
  GAY96_RS12045 (GAY96_11980) - 2567012..2567536 (-) 525 WP_228345247.1 chemotaxis protein CheW -
  GAY96_RS12050 (GAY96_11985) pilH 2567538..2567903 (-) 366 WP_228345248.1 twitching motility response regulator PilH -
  GAY96_RS12055 (GAY96_11990) pilG 2567946..2568329 (-) 384 WP_228345249.1 twitching motility response regulator PilG Regulator
  GAY96_RS12060 (GAY96_11995) gshB 2568556..2569506 (+) 951 WP_265573670.1 glutathione synthase -
  GAY96_RS12065 (GAY96_12000) - 2569641..2570516 (+) 876 WP_265573671.1 energy transducer TonB -
  GAY96_RS12070 (GAY96_12005) - 2570518..2571075 (+) 558 WP_228345252.1 YqgE/AlgH family protein -
  GAY96_RS12075 (GAY96_12010) ruvX 2571075..2571527 (+) 453 WP_265573672.1 Holliday junction resolvase RuvX -
  GAY96_RS12080 (GAY96_12015) pyrR 2571524..2572018 (+) 495 WP_228345254.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  GAY96_RS12085 (GAY96_12020) - 2572032..2573066 (+) 1035 WP_228345255.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14194.48 Da        Isoelectric Point: 8.4748

>NTDB_id=394983 GAY96_RS12055 WP_228345249.1 2567946..2568329(-) (pilG) [Venatoribacter cucullus strain ASxS5]
MEDNFQNVKVMVIDDSKTIRRTAETLLKKVGCDVITATDGFDALAKIADTHPDIIFVDIMMPRLDGYQTCALIKNNSKFK
STPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKEELLGSIRQYVKS

Nucleotide


Download         Length: 384 bp        

>NTDB_id=394983 GAY96_RS12055 WP_228345249.1 2567946..2568329(-) (pilG) [Venatoribacter cucullus strain ASxS5]
ATGGAAGATAACTTTCAGAACGTCAAAGTCATGGTCATCGACGACAGTAAAACCATTCGTCGTACCGCCGAGACGCTGCT
TAAAAAAGTCGGATGTGACGTCATCACTGCCACCGATGGTTTCGACGCATTGGCCAAGATCGCTGATACTCACCCGGACA
TCATCTTTGTCGATATCATGATGCCCCGTCTGGACGGATACCAGACCTGCGCATTGATCAAAAATAATTCCAAGTTCAAG
TCGACACCCGTCATCATGCTGTCCAGTAAGGACGGCTTGTTCGATAAAGCTAAGGGACGCATTGTCGGGTCAGATCAGTA
TCTGACCAAGCCCTTCAGCAAGGAAGAGCTGCTGGGATCCATCCGTCAGTATGTAAAATCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

77.165

100

0.772
  vicR Streptococcus mutans UA159

42.373

92.913

0.394
  pilH Synechocystis sp. PCC 6803

41.525

92.913

0.386

Multiple sequence alignment