Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SPSINT_RS00170 Genome accession   NC_014925
Coordinates   33586..34092 (+) Length   168 a.a.
NCBI ID   WP_014614920.1    Uniprot ID   A0A161W350
Organism   Staphylococcus pseudintermedius HKU10-03     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 28586..39092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPSINT_RS13350 - 29239..29325 (+) 87 WP_080552884.1 DUF933 domain-containing protein -
  SPSINT_RS00150 (SPSINT_0030) - 29613..30548 (+) 936 WP_015728516.1 ABC transporter ATP-binding protein -
  SPSINT_RS00155 (SPSINT_0031) - 30541..31350 (+) 810 WP_015728517.1 ABC transporter permease subunit -
  SPSINT_RS00160 (SPSINT_0032) sbi 31404..32930 (-) 1527 WP_015728518.1 Ig-binding surface protein Sbi/SpsK -
  SPSINT_RS00165 (SPSINT_0033) rpsF 33267..33563 (+) 297 WP_014614921.1 30S ribosomal protein S6 -
  SPSINT_RS00170 (SPSINT_0034) ssbA 33586..34092 (+) 507 WP_014614920.1 single-stranded DNA-binding protein Machinery gene
  SPSINT_RS00175 (SPSINT_0035) rpsR 34146..34388 (+) 243 WP_014614919.1 30S ribosomal protein S18 -
  SPSINT_RS00180 (SPSINT_0036) - 34579..35298 (+) 720 WP_015728519.1 Abi family protein -
  SPSINT_RS13100 - 35295..35669 (+) 375 WP_157980673.1 Abi family protein -
  SPSINT_RS00185 (SPSINT_0038) - 35883..37874 (-) 1992 WP_014614918.1 catalase -
  SPSINT_RS13280 (SPSINT_0039) - 38043..38174 (+) 132 WP_015728521.1 hypothetical protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18738.42 Da        Isoelectric Point: 5.1957

>NTDB_id=39497 SPSINT_RS00170 WP_014614920.1 33586..34092(+) (ssbA) [Staphylococcus pseudintermedius HKU10-03]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNHQQPANDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=39497 SPSINT_RS00170 WP_014614920.1 33586..34092(+) (ssbA) [Staphylococcus pseudintermedius HKU10-03]
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACCTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGCGTTGTTT
TCCGTAAACAAGCAGAAAATGTAAACAACTTTTTGTTTAAAGGAAGTCTCGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAATCAAAACCAAGGCAATCAATTCGATAGCTACGGTCAAGGATTCGGTGGACAACAACAAG
GCCAAAATTCGTCTTATCAAAACAATCATCAGCAACCAGCTAACGATAATCCATTTGCGAATGCGAACGGTCCTATCGAT
ATTAGCGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A161W350

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.773

100

0.679
  ssb Latilactobacillus sakei subsp. sakei 23K

56.14

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.476

0.381

Multiple sequence alignment