Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   HPY15_RS00955 Genome accession   NZ_CP053800
Coordinates   199026..201104 (-) Length   692 a.a.
NCBI ID   WP_114716691.1    Uniprot ID   -
Organism   Vibrio cholerae strain SO5Y     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 194026..206104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY15_RS00940 (HPY15_00940) ompR 195149..195871 (+) 723 WP_000230023.1 two-component system response regulator OmpR -
  HPY15_RS00945 (HPY15_00945) envZ 195940..197256 (+) 1317 WP_001222687.1 two-component system sensor histidine kinase EnvZ -
  HPY15_RS00950 (HPY15_00950) - 197281..198681 (-) 1401 WP_046125995.1 uracil-xanthine permease family protein -
  HPY15_RS00955 (HPY15_00955) recG 199026..201104 (-) 2079 WP_114716691.1 ATP-dependent DNA helicase RecG Machinery gene
  HPY15_RS00960 (HPY15_00960) spoT 201223..203340 (-) 2118 WP_000280452.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  HPY15_RS00965 (HPY15_00965) rpoZ 203372..203644 (-) 273 WP_000135052.1 DNA-directed RNA polymerase subunit omega -
  HPY15_RS00970 (HPY15_00970) gmk 203752..204375 (-) 624 WP_000515793.1 guanylate kinase -
  HPY15_RS00975 (HPY15_00975) - 204743..205414 (+) 672 WP_001015358.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 76947.17 Da        Isoelectric Point: 7.5643

>NTDB_id=394933 HPY15_RS00955 WP_114716691.1 199026..201104(-) (recG) [Vibrio cholerae strain SO5Y]
MSQLLSAVPLCELSGVGAKVAEKLEKVGLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAAVQGKVMAVDTLFGKRKML
TVKISDGNGTLTLRFFNFTAAMKNNFAEGKFVHAYGEIKRGNQGLEIIHPDYKFFAPAQTPDVEPNLTPVYPTTEGLRQL
TLRNLTDQALVLLEKSAVQELLPSGLYDQQMTLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLAIRS
QGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLEKPHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQVA
LMAPTELLAEQHALNFAQWLEPMGIQVGWLAGKLKGKARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHR
FGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHACLN
EGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVPN
ASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLFHAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQT
GLADFKIADLVRDQQLVPQVQRIARHIHERYPQNAQAIIDRWLGERDIYAKA

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=394933 HPY15_RS00955 WP_114716691.1 199026..201104(-) (recG) [Vibrio cholerae strain SO5Y]
ATGTCACAACTCCTCTCAGCCGTTCCTCTTTGTGAACTCTCCGGTGTCGGGGCCAAAGTCGCCGAAAAACTGGAGAAAGT
CGGCTTGCACACGGTGCAGGATCTGCTGTTTCATCTTCCGCTGCGTTATGAAGATCGCACTCGCGTTTATCCGATAGTGC
AACTGCACCACGGTTTATGGGCCGCGGTACAAGGCAAAGTGATGGCGGTGGATACCCTGTTTGGCAAACGCAAAATGCTC
ACCGTAAAAATCAGTGATGGCAACGGTACACTGACGCTGCGTTTTTTTAACTTCACCGCGGCGATGAAAAACAACTTTGC
GGAAGGCAAATTTGTGCATGCCTATGGGGAGATCAAACGGGGTAATCAAGGCTTAGAGATCATCCATCCTGACTACAAAT
TCTTTGCCCCTGCGCAAACGCCCGATGTCGAACCGAACCTGACTCCGGTTTACCCAACCACTGAAGGACTGCGCCAACTC
ACCCTACGTAATTTGACTGACCAAGCGTTGGTGCTACTGGAAAAATCTGCGGTGCAGGAGTTACTGCCGTCTGGGCTTTA
CGATCAGCAGATGACCTTGGCCCAAGCGCTCAAAATCATTCATCGCCCTTCGGCGGATATCGATCTGCGCCTGTTTGAAC
AAGGGCGACATCCGGCGCAAGTTCGGCTAATCATGGAAGAGCTGCTGGCGCAGAATCTCTCGATGCTTGCGATTCGCAGT
CAAGGCCAGCAAGATGTGGCCTTGCCTCTGGCTCCTGTTCACCAGCTTAAACAGCAACTTTTAGCGCAACTGCCCTTTTC
ACCGACTAAGGCGCAGCAGCGTGTGGTCGCCGAAATCGAAGCGGATTTAGAAAAACCACATCCTATGATGCGCTTAGTGC
AAGGTGATGTCGGCTCAGGCAAAACCTTAGTCGCAGCGCTTGCGGCAGTGCGGGCGATTGAGCATGGCTATCAAGTAGCC
TTGATGGCCCCCACCGAGCTGTTGGCCGAGCAGCACGCGCTCAATTTTGCGCAGTGGCTAGAGCCGATGGGCATTCAAGT
GGGGTGGCTCGCGGGTAAGCTTAAAGGCAAAGCGCGGGAAACGGAGCTGGCACGCATCGCCAGTGGCGAAGTGAAAATGG
TGGTCGGCACCCATGCACTGTTTCAAGAGCAAGTGTCGTTTGACCATCTAGCCTTGGTCATTATTGATGAGCAGCATCGC
TTCGGGGTACATCAGCGTTTAGAGCTGCGCGAGAAAGGCGCAAAACAAGGCGCGTACCCGCATCAGCTCATCATGACCGC
GACGCCCATTCCGCGCACATTAGCGATGACGGCTTATGCCGATTTGGAAACCTCGGTGATTGATGAGTTACCCCCCGGGC
GTACTCCGATTCAAACCGTAGCGATTCCGGATACCAAACGCGATGAGATTGTCGAGCGCATTCGCCACGCCTGCCTCAAT
GAAGGCAAGCAAGCGTATTGGGTGTGTACTTTGATTGATGAATCCGAAGTGCTGGAAGCACAAGCGGCCGCAGAAACGGC
AGAAGAACTGCAACGTAAACTTCCCGAAGTCAAAATCGGCTTAGTGCATGGCCGGATGAAACCCGCCGAGAAGCAAGCGG
TAATGCAAGCGTTTAAAAATAATGAGCTGCATCTGCTCGTCGCCACTACAGTGATTGAAGTGGGCGTGGATGTACCCAAT
GCCAGCTTGATGATCATTGAAAACCCCGAGCGTTTGGGGCTAGCTCAACTTCACCAGCTACGCGGCCGTGTTGGGCGTGG
TACCGTAGCCAGCCATTGTGTGCTGCTGTTTCATGCACCACTCTCCAAAACCGCGCAAAAGCGTTTAGGCGTTTTGCGTG
AAAGCAACGATGGATTTGTCATCGCGCAGCGCGACTTGGAAATTCGTGGCCCCGGAGAGCTATTAGGCACCAAACAAACC
GGCTTAGCCGATTTCAAAATTGCTGATCTGGTACGCGATCAGCAATTGGTTCCGCAAGTGCAACGCATCGCGCGACATAT
CCATGAACGCTACCCACAAAATGCACAAGCCATCATCGACCGCTGGTTAGGCGAACGTGATATTTACGCCAAAGCTTAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(479-587)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-674)

DEAD/DEAH box helicase (DEAD)

(271-432)

RecG wedge domain (RecG_wedge)

(15-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.744

97.11

0.493
  recG/mmsA Streptococcus pneumoniae R6

39.701

96.821

0.384
  recG/mmsA Streptococcus pneumoniae R36A

39.701

96.821

0.384
  recG Bacillus subtilis subsp. subtilis str. 168

39.478

94.075

0.371