Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   DLI71_RS10735 Genome accession   NZ_CP045528
Coordinates   2205105..2206235 (+) Length   376 a.a.
NCBI ID   WP_150424273.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 6507     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 2200105..2211235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLI71_RS10710 (DLI71_10710) - 2200374..2200580 (-) 207 WP_000182542.1 hypothetical protein -
  DLI71_RS10715 (DLI71_10715) - 2200634..2202739 (-) 2106 WP_150424262.1 TonB-dependent copper receptor -
  DLI71_RS10720 (DLI71_10720) - 2202812..2203240 (-) 429 WP_000231977.1 DUF2946 family protein -
  DLI71_RS10725 (DLI71_10725) def 2203277..2203807 (-) 531 WP_001196539.1 peptide deformylase -
  DLI71_RS10730 (DLI71_10730) tsaP 2203930..2205084 (+) 1155 WP_000755286.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  DLI71_RS10735 (DLI71_10735) dprA 2205105..2206235 (+) 1131 WP_150424273.1 DNA-processing protein DprA Machinery gene
  DLI71_RS10740 (DLI71_10740) - 2206286..2206855 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  DLI71_RS10745 (DLI71_10745) - 2207247..2208167 (-) 921 WP_000084546.1 DMT family transporter -
  DLI71_RS10750 (DLI71_10750) - 2208273..2208923 (-) 651 WP_086227614.1 TetR/AcrR family transcriptional regulator -
  DLI71_RS10755 (DLI71_10755) - 2209060..2210274 (+) 1215 WP_000372838.1 MFS transporter -
  DLI71_RS10760 (DLI71_10760) - 2210296..2211060 (+) 765 WP_000786955.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41986.50 Da        Isoelectric Point: 6.4988

>NTDB_id=394876 DLI71_RS10735 WP_150424273.1 2205105..2206235(+) (dprA) [Acinetobacter baumannii strain 6507]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLELHANHLKRVNEFQTPQSQAQFEQLVQQV
RQHTDFILTPDDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDTTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIP
EHLIDLYQSLDWVGQNIDQLVIHHNVPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=394876 DLI71_RS10735 WP_150424273.1 2205105..2206235(+) (dprA) [Acinetobacter baumannii strain 6507]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCACTCTTTAGTCAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTGGAGCTAC
ATGCTAATCACTTAAAGCGTGTAAACGAATTTCAAACGCCCCAAAGTCAAGCGCAGTTTGAACAACTTGTACAACAAGTT
CGTCAGCATACAGATTTTATTTTAACGCCGGATGACTCTGGCTATCCCACTCAATTACTTCCTTATACAGATCATCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAGATTGCGATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCTTATTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGCGGTCTGGCTTATGGC
ATTGATGAAGCCGCTCATCAAGGTGCATCTGCTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAACATATTTTAGCTCAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CGCCATTACAACAGCATTTTCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGCGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTCGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATCCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCCACTCAATGGCAAAGTCAGCAACAAAATCAAACTGAAGAAGCTAATACGAATACTCCAGAAATTCCT
GAGCATTTGATTGACCTTTATCAGTCTTTAGACTGGGTAGGACAAAATATTGACCAGCTTGTAATTCATCATAATGTGCC
GGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

98.138

100

0.981

  dprA Acinetobacter baumannii strain A118

97.872

100

0.979

  dprA Acinetobacter baylyi ADP1

70.079

100

0.71

  dprA Vibrio cholerae strain A1552

43.949

83.511

0.367


Multiple sequence alignment