Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   HPY13_RS09315 Genome accession   NZ_CP053796
Coordinates   2046707..2048737 (-) Length   676 a.a.
NCBI ID   WP_000029983.1    Uniprot ID   -
Organism   Vibrio cholerae strain SL4G     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2041707..2053737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY13_RS09290 (HPY13_09295) moaB 2041817..2042329 (-) 513 WP_000509705.1 molybdenum cofactor biosynthesis protein B -
  HPY13_RS09295 (HPY13_09300) moaA 2042389..2043378 (-) 990 WP_032480300.1 GTP 3',8-cyclase MoaA -
  HPY13_RS09300 (HPY13_09305) - 2043685..2044575 (+) 891 WP_000061070.1 YvcK family protein -
  HPY13_RS09305 (HPY13_09310) luxU 2044564..2044905 (-) 342 WP_001209531.1 quorum-sensing phosphorelay protein LuxU -
  HPY13_RS09310 (HPY13_09315) luxO 2044909..2046276 (-) 1368 WP_108243939.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  HPY13_RS09315 (HPY13_09320) uvrB 2046707..2048737 (-) 2031 WP_000029983.1 excinuclease ABC subunit UvrB Machinery gene
  HPY13_RS09325 (HPY13_09330) rsxA 2049619..2050200 (+) 582 WP_000141550.1 electron transport complex subunit RsxA -
  HPY13_RS09330 (HPY13_09335) rsxB 2050200..2050787 (+) 588 WP_000104488.1 electron transport complex subunit RsxB -
  HPY13_RS09335 (HPY13_09340) rsxC 2050796..2053240 (+) 2445 WP_175249790.1 electron transport complex subunit RsxC -

Sequence

Protein


Download         Length: 676 a.a.        Molecular weight: 76643.40 Da        Isoelectric Point: 5.0342

>NTDB_id=394812 HPY13_RS09315 WP_000029983.1 2046707..2048737(-) (uvrB) [Vibrio cholerae strain SL4G]
MSKAFELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILAPNKTLAAQLYGEMKAF
FPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLH
LRRGDVINQRDMLRRLAELQYSRNDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLA
RFTIYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRAEG
EPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVEFGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEY
ELTKSGGEVAEQVVRPTGLLDPIIEVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSD
IDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAARNVNGKAILYADSITK
SMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELGDIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEIS
KLEAAMYQHAQNLEFELAAQKRDEIHQLRQQFIANS

Nucleotide


Download         Length: 2031 bp        

>NTDB_id=394812 HPY13_RS09315 WP_000029983.1 2046707..2048737(-) (uvrB) [Vibrio cholerae strain SL4G]
ATGAGCAAAGCATTTGAATTGGTTTCAGACTATCAACCCGCAGGCGATCAACCGACAGCGATTAAGCAATTGCTGGAGGG
GTTGGAAGCGGGCTTGGCTCATCAAACTCTGCTTGGGGTAACGGGTTCAGGTAAAACCTTTACGTTAGCGAATGTGATTG
CCACCGCGCAGCGTCCCACCATTATACTTGCGCCTAATAAGACACTGGCGGCTCAATTGTACGGCGAAATGAAAGCCTTT
TTTCCCAACAATGCGGTGGAGTATTTCGTTTCTTACTACGACTACTATCAACCAGAAGCCTATGTGCCGACCACGGATAC
TTTTATTGAAAAAGACGCGTCCGTGAACGCTCATATTGAACAGATGCGCTTATCGGCCACTAAAGCCTTGCTTGAGCGCA
AAGATGCGGTGATTGTCGCTTCAGTTTCTGCCATCTACGGTCTGGGCGATCCGGACTCTTATCTAAAAATGATGCTCCAT
TTACGTCGTGGTGATGTGATTAACCAACGCGACATGTTGCGTCGTTTGGCGGAGCTGCAATATTCACGCAATGATATGGC
ATTTGAGCGCGGTCAGTTCCGGGTACGCGGAGAAGTGATTGATATTTTCCCTGCCGAATCGGATCAAGAAGCTGTTCGAG
TGGAAATGTTTGATGATGAAATCGAATGCATCAGTTTATTTGATCCGCTGACCGGCGTGATTACGTCCCGCGATTTAGCT
CGCTTTACGATTTACCCCAAAACTCACTATGTCACCCCACGCGAGCGCATTCTTGAGGCGATAGAGCAGATTAAGAGCGA
GTTGCAGGTCCGCCGCCAATATTTGCTGGATAACAATAAATTGCTGGAAGAGCAGCGGATTTCTCAGCGAACTCAGTTTG
ATATTGAGATGATGAACGAATTGGGATTCTGCTCAGGGATCGAAAACTACTCACGTTACCTAAGTGGTCGTGCAGAAGGC
GAGCCGCCTCCAACGCTCTTTGATTACTTGCCTCACGATGGCTTGCTGATCATCGATGAATCACACGTCACCGTGCCGCA
AATTGGCGCGATGTTTAAAGGCGATCGTTCGCGAAAAGAAACGCTGGTGGAGTTCGGTTTTCGCCTGCCGTCAGCCTTGG
ATAACCGCCCACTTAAGTTTGATGAATTTGAAGCATTAGCACCGCAAACCATCTTTGTGTCAGCAACACCGAGTGAATAT
GAGCTCACTAAATCGGGTGGTGAAGTGGCGGAGCAGGTGGTTCGTCCAACCGGTTTGTTAGACCCGATTATTGAAGTACG
TCCGGTCGCCACTCAGGTGGATGATCTGCTTTCTGAAGCGCGCATTCGCGCGGCCAATGATGAGCGGATTTTGGTGACTA
CCTTAACCAAACGCATGGCCGAGGATTTAACCGAATATCTGCATGAGCATGGTGTGAAAGTTCGCTATTTACACTCGGAC
ATTGATACCGTCGAACGGGTAGAAATTATTCGTGATTTACGATTAGGGGTGTTTGATGTGTTGGTGGGGATCAACTTGCT
ACGTGAAGGTCTGGACATGCCAGAGGTCGCTTTAGTGGCGATTTTGGATGCTGATAAAGAAGGTTTTTTGCGTTCCGAGC
GTTCACTCATTCAGACCATGGGTCGTGCAGCACGTAACGTGAATGGTAAAGCAATTTTGTATGCCGACTCGATCACCAAA
TCCATGCGTAAAGCGATCGATGAAACCGAGCGTCGCCGTGAGAAGCAGCTGGCTTATAATGAGCAGCGCGGTATCACGCC
GCAGCCTTTAAAACGCAGCGTTAAAGACATCATGGAGCTGGGCGATATTGCGAAATCGCGTAAACAGAAGAACAGCAAAG
TGGTGCCATTGGCGAAAGTGGCTGAAGAATCGGCGGCTTACCAAGTGTTGACCCCTCAGCAGCTTGAAAAAGAGATCAGT
AAATTAGAAGCCGCAATGTATCAGCATGCACAGAACTTAGAGTTTGAGTTGGCCGCGCAAAAACGTGATGAAATTCATCA
GTTGCGTCAGCAGTTTATCGCCAATAGTTAG

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(16-119)

UvrB/uvrC motif (UVR)

(636-671)

UvrB interaction domain (UvrB_inter)

(159-250)

Ultra-violet resistance protein B (UvrB)

(553-594)

Helicase conserved C-terminal domain (Helicase_C)

(442-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.69

97.485

0.543
  uvrB Streptococcus pneumoniae R6

55.69

97.485

0.543
  uvrB Streptococcus pneumoniae D39

55.69

97.485

0.543

Multiple sequence alignment