Detailed information NTG0039479

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: RIA_RS06670
• Genome accession: NC_017569
• Coordinates: 1397036..1397620 (-)
• Length: 194 a.a.
• NCBI ID: WP_004918099.1
• Uniprot ID: E4TBU9
• Organism: Riemerella anatipestifer RA-GD
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1392036..1402620

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RIA_RS06670 (RIA_1408)	ruvA	1397036..1397620 (-)	585	WP_004918099.1	Holliday junction branch migration protein RuvA	Machinery gene
RIA_RS06675 (RIA_1409)	-	1397787..1399223 (-)	1437	WP_004918097.1	RagB/SusD family nutrient uptake outer membrane protein	-
RIA_RS06680 (RIA_1410)	-	1399238..1402168 (-)	2931	WP_004918095.1	SusC/RagA family TonB-linked outer membrane protein	-

Sequence

Protein

• Length: 194 a.a.
• Molecular weight: 21407.96 Da
• Isoelectric Point: 6.8856

>NTDB_id=39479 RIA_RS06670 WP_004918099.1 1397036..1397620(-) (ruvA) [Riemerella anatipestifer RA-GD]
MIYSLRGIVQELSPTHLIIETGGVGYFVSVSVNTSKHFSIGKESLIYTQQIIREDAHLLYGFSELKEKEMFNLLISVNGV
GPASAMIMLSSLELREIAQAILSSNSAVLQKVKGIGTKTAQRIIIDLKDKVLHFGADESDISTVIDNKVKEESLSALEVL
GIPKKMSEKLANKILKQNPEIQTEDLVKQILKNI

Nucleotide

• Length: 585 bp

>NTDB_id=39479 RIA_RS06670 WP_004918099.1 1397036..1397620(-) (ruvA) [Riemerella anatipestifer RA-GD]
ATGATTTACTCTCTACGAGGTATCGTTCAGGAGCTTAGCCCAACCCATTTAATTATAGAAACTGGTGGTGTAGGCTACTT
TGTAAGCGTTAGTGTAAACACTTCTAAACACTTTTCCATTGGGAAAGAATCTTTAATCTACACACAACAAATCATTCGAG
AAGACGCTCACTTATTGTACGGTTTTTCGGAGCTCAAAGAGAAAGAAATGTTTAACCTACTTATTTCTGTAAATGGTGTA
GGACCAGCCTCTGCTATGATTATGCTTTCCTCACTAGAATTAAGAGAAATAGCACAAGCCATACTCTCTAGCAATAGTGC
TGTATTACAAAAAGTAAAAGGTATAGGCACCAAAACTGCACAACGAATTATCATTGATTTAAAAGATAAAGTATTGCATT
TTGGAGCAGATGAATCTGATATTTCCACCGTTATTGATAATAAAGTAAAAGAAGAATCGTTATCTGCATTAGAAGTTTTA
GGAATCCCTAAAAAAATGTCAGAAAAGTTAGCCAACAAAATTTTGAAACAAAATCCAGAAATTCAAACGGAAGATTTAGT
AAAACAAATTTTGAAAAACATTTAA

Domains

Predicted by InterProScan.

• Helix-hairpin-helix domain (HHH_5) (71-129)

• RuvA N terminal domain (RuvA_N) (1-61)

• RuvA, C-terminal domain (RuvA_C) (149-193)

3D structure

• AlphaFold DB: E4TBU9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	34.804	100	0.366
ruvA	Helicobacter pylori 26695	36.41	100	0.366