Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   GE021_RS11295 Genome accession   NZ_CP053792
Coordinates   1318862..1319032 (+) Length   56 a.a.
NCBI ID   WP_164407343.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_77_1     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1313862..1324032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE021_RS06580 (GE021_006580) - 1314974..1316227 (+) 1254 WP_125074595.1 extracellular solute-binding protein -
  GE021_RS06585 (GE021_006585) - 1316511..1317872 (+) 1362 WP_125074594.1 carbohydrate ABC transporter permease -
  GE021_RS06590 (GE021_006590) - 1317872..1318708 (+) 837 WP_125074593.1 sugar ABC transporter permease -
  GE021_RS11295 (GE021_006595) ccpA 1318862..1319032 (+) 171 WP_164407343.1 LacI family DNA-binding transcriptional regulator Regulator
  GE021_RS11300 (GE021_006600) - 1319396..1319614 (+) 219 WP_172774138.1 hypothetical protein -
  GE021_RS06605 (GE021_006605) - 1319803..1320553 (-) 751 Protein_1276 IS630 transposase-related protein -
  GE021_RS06610 (GE021_006610) dltD 1320814..1322076 (-) 1263 WP_125074592.1 D-alanyl-lipoteichoic acid biosynthesis protein DltD -
  GE021_RS06615 (GE021_006615) dltC 1322069..1322308 (-) 240 WP_002984216.1 D-alanine--poly(phosphoribitol) ligase subunit DltC -
  GE021_RS06620 (GE021_006620) dltB 1322324..1323580 (-) 1257 WP_125074591.1 D-alanyl-lipoteichoic acid biosynthesis protein DltB -

Sequence

Protein


Download         Length: 56 a.a.        Molecular weight: 6264.13 Da        Isoelectric Point: 8.0094

>NTDB_id=394673 GE021_RS11295 WP_164407343.1 1318862..1319032(+) (ccpA) [Streptococcus canis strain HL_77_1]
MTSKITIKDIAREVGISVTTVSYVLNQRNDQKISEETCNKVLHISNLLNYTPNQAA

Nucleotide


Download         Length: 171 bp        

>NTDB_id=394673 GE021_RS11295 WP_164407343.1 1318862..1319032(+) (ccpA) [Streptococcus canis strain HL_77_1]
ATGACATCTAAAATTACTATTAAAGATATTGCGCGAGAAGTCGGGATTTCTGTAACGACCGTTTCTTACGTGTTAAACCA
GCGCAATGATCAAAAAATTAGTGAAGAAACCTGCAATAAGGTTCTTCATATTAGCAACCTTCTTAACTATACGCCTAATC
AGGCAGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(6-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

42.593

96.429

0.411
  ccpA Streptococcus pneumoniae D39

44.231

92.857

0.411
  ccpA Streptococcus gordonii str. Challis substr. CH1

44.231

92.857

0.411