Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   GE021_RS08850 Genome accession   NZ_CP053792
Coordinates   1793824..1795839 (-) Length   671 a.a.
NCBI ID   WP_164406464.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_77_1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1788824..1800839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE021_RS08835 (GE021_008825) - 1790088..1790540 (+) 453 WP_003045102.1 universal stress protein -
  GE021_RS08840 (GE021_008830) - 1790875..1792263 (-) 1389 WP_093998816.1 Cof-type HAD-IIB family hydrolase -
  GE021_RS08845 (GE021_008835) - 1792336..1793301 (+) 966 WP_003045108.1 asparaginase -
  GE021_RS11345 - 1793465..1793616 (-) 152 Protein_1712 aldo/keto reductase family oxidoreductase -
  GE021_RS08850 (GE021_008840) recG/mmsA 1793824..1795839 (-) 2016 WP_164406464.1 ATP-dependent DNA helicase RecG Machinery gene
  GE021_RS08855 (GE021_008845) - 1795940..1797394 (-) 1455 WP_172774164.1 ATP-binding cassette domain-containing protein -
  GE021_RS08860 (GE021_008850) - 1797331..1798011 (-) 681 WP_003045122.1 energy-coupling factor transporter transmembrane component T -
  GE021_RS08865 (GE021_008855) - 1798008..1798601 (-) 594 WP_164406460.1 MptD family putative ECF transporter S component -
  GE021_RS08870 (GE021_008860) - 1798598..1800268 (-) 1671 WP_164406458.1 amino acid ABC transporter ATP-binding/permease protein -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 74931.06 Da        Isoelectric Point: 9.1096

>NTDB_id=394647 GE021_RS08850 WP_164406464.1 1793824..1795839(-) (recG/mmsA) [Streptococcus canis strain HL_77_1]
MLLTAPIASLKGLGPKSAEKFQKLAIYQVKDLLLYYPFRYEDFKSKSIVELLDGEKAVLTGTIVTPPSVQYYGFKRNRLT
FKLKQGEVVIGVSFFNQPYLQDKLILGNEVAIFGKWDQKKTALTGLKLLMTLEDELQPVYHVAQGISQTALIKAIKAAFD
SGALASLKENLPDHLLAKYRLMPRQEAVYAMHFPKTLSEYKQALRRIKFEELFYFQMQLQVLKRANKSESNGLAIAFDQE
KLDHKIAALPFPLTQAQEQSLKEILKDMRSAAHMNRLLQGDVGSGKTVIASLAMYAAYTAGLQSALMVPTEILAEQHYDS
LSQLFPDLSIAILTSGMKVPEKRTALATIADGSVDMIVGTHALIQDAVQYHKLGLVITDEQHRFGVKQRRIFREKGDNPD
VLMMTATPIPRTLAITAYGEMDVSIIDELPAGRKPIVTRWVKHQQLNTVLAWMKTELEQGAQAYVISPLIEESEALDLKN
AVALEAELKAYFKKSARIALMHGKMKTDEKEAIMQAFKAQEIDLLVSTTVIEVGVNVPNASIMLIMDADRFGLSQLHQLR
GRVGRGHKQSYAVLVANPKTESGKERMTIMTKTNDGFVLAEADLKMRGAGEIFGTRQSGIPEFKTADIVEDYAILEEARK
VAVAIVSEPNWQQQAKWQSIVSHLEIKGDFD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=394647 GE021_RS08850 WP_164406464.1 1793824..1795839(-) (recG/mmsA) [Streptococcus canis strain HL_77_1]
ATGTTATTAACAGCCCCCATTGCTAGCTTAAAAGGCTTAGGCCCTAAGTCAGCAGAAAAATTTCAAAAATTAGCTATTTA
TCAAGTGAAAGACCTCTTGCTCTATTACCCGTTTCGTTACGAGGATTTTAAGAGCAAGTCTATTGTTGAGCTTTTAGATG
GTGAAAAGGCTGTGCTCACAGGTACCATTGTGACGCCACCCAGTGTGCAATATTATGGCTTTAAGCGGAATCGGTTGACT
TTTAAATTGAAACAAGGCGAAGTGGTCATAGGGGTTAGTTTTTTTAACCAGCCTTATTTACAGGACAAATTGATTTTAGG
TAATGAGGTCGCTATTTTTGGAAAATGGGATCAGAAAAAAACGGCTTTGACAGGGTTGAAATTACTCATGACCTTGGAAG
ATGAATTGCAGCCAGTTTATCATGTGGCTCAGGGCATTAGTCAAACGGCCCTGATAAAAGCTATCAAAGCAGCTTTTGAT
AGCGGAGCTTTAGCAAGTCTAAAGGAAAATCTGCCTGATCACCTCCTTGCTAAATACCGATTAATGCCAAGGCAAGAAGC
GGTTTATGCCATGCATTTTCCCAAAACCTTGAGTGAGTACAAGCAGGCCTTGAGACGCATTAAATTTGAGGAACTCTTTT
ATTTTCAAATGCAGTTGCAGGTATTGAAGCGAGCAAACAAATCAGAGAGTAATGGACTGGCTATTGCCTTTGATCAAGAA
AAGCTTGATCACAAAATTGCTGCTCTGCCATTCCCCTTGACCCAAGCTCAGGAACAAAGTCTAAAGGAAATTTTAAAGGA
TATGCGTTCAGCTGCCCACATGAATCGGCTCTTGCAAGGAGATGTTGGATCTGGGAAAACAGTTATTGCTAGCCTTGCCA
TGTATGCTGCCTATACTGCTGGCCTCCAATCAGCCCTGATGGTGCCCACAGAAATTCTTGCCGAGCAACATTATGATAGT
CTGAGCCAGCTCTTTCCTGACCTTTCTATTGCTATTCTGACCTCAGGCATGAAGGTTCCTGAAAAACGCACAGCTTTAGC
GACTATTGCAGATGGATCGGTGGATATGATTGTGGGGACTCACGCGCTGATTCAGGATGCGGTTCAATACCACAAGTTAG
GTCTTGTCATTACAGATGAACAGCACCGATTTGGGGTTAAACAGCGCCGTATTTTCCGTGAAAAAGGCGATAATCCAGAT
GTCCTTATGATGACAGCAACTCCTATTCCAAGAACCTTAGCTATTACAGCCTATGGGGAAATGGATGTGTCCATTATTGA
CGAATTACCAGCTGGTCGAAAACCCATTGTCACGCGCTGGGTCAAGCATCAACAATTGAACACCGTTTTAGCTTGGATGA
AAACTGAACTGGAACAAGGAGCACAAGCCTATGTGATTTCTCCTTTGATTGAGGAATCTGAAGCCTTGGACCTTAAAAAT
GCTGTTGCCTTGGAAGCTGAATTAAAGGCCTATTTTAAGAAATCCGCCCGCATTGCTCTGATGCATGGTAAGATGAAGAC
CGACGAAAAAGAAGCCATCATGCAAGCTTTCAAAGCACAGGAAATTGATCTCTTGGTCTCAACAACAGTTATTGAAGTCG
GTGTCAATGTGCCTAACGCTAGTATCATGCTGATTATGGATGCCGACCGTTTTGGCCTTAGTCAACTGCATCAGCTACGT
GGGCGCGTAGGCCGTGGACACAAACAGTCTTATGCGGTGCTGGTGGCCAATCCTAAGACGGAATCGGGTAAGGAACGCAT
GACCATTATGACAAAAACTAATGATGGCTTTGTTCTGGCTGAAGCAGACCTCAAAATGAGAGGGGCTGGGGAAATTTTTG
GAACCCGTCAGTCTGGTATTCCAGAATTTAAGACTGCAGATATTGTCGAAGATTATGCCATTTTAGAAGAGGCTCGCAAG
GTAGCAGTAGCCATTGTTTCTGAGCCTAATTGGCAGCAGCAAGCAAAATGGCAGAGCATTGTTAGTCATCTTGAAATCAA
AGGGGATTTTGATTAG

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-658)

Helicase conserved C-terminal domain (Helicase_C)

(453-566)

DEAD/DEAH box helicase (DEAD)

(254-411)

RecG wedge domain (RecG_wedge)

(7-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

69.151

100

0.692
  recG/mmsA Streptococcus pneumoniae R36A

69.151

100

0.692
  recG Bacillus subtilis subsp. subtilis str. 168

51.608

97.317

0.502
  recG Neisseria meningitidis strain C311

39.574

97.914

0.387