Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   FM038_RS01905 Genome accession   NZ_CP045503
Coordinates   437231..438142 (-) Length   303 a.a.
NCBI ID   WP_142871697.1    Uniprot ID   A0AAJ4AQD6
Organism   Shewanella eurypsychrophilus strain YLB-08     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 432231..443142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FM038_RS01885 (FM038_001900) mutT 435138..435545 (-) 408 WP_142871693.1 8-oxo-dGTP diphosphatase MutT -
  FM038_RS01890 (FM038_25300) yacG 435549..435761 (-) 213 WP_142871694.1 DNA gyrase inhibitor YacG -
  FM038_RS01895 (FM038_001905) zapD 435847..436581 (-) 735 WP_142871695.1 cell division protein ZapD -
  FM038_RS01900 (FM038_001910) coaE 436590..437195 (-) 606 WP_142871696.1 dephospho-CoA kinase -
  FM038_RS01905 (FM038_001915) pilD 437231..438142 (-) 912 WP_142871697.1 prepilin peptidase Machinery gene
  FM038_RS01910 (FM038_001920) pilC 438202..439473 (-) 1272 WP_142871698.1 type II secretion system F family protein Machinery gene
  FM038_RS01915 (FM038_001925) pilB 439573..441282 (-) 1710 WP_142871699.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FM038_RS01920 (FM038_001930) - 441361..441795 (-) 435 WP_142871700.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 303 a.a.        Molecular weight: 33730.94 Da        Isoelectric Point: 6.4811

>NTDB_id=394635 FM038_RS01905 WP_142871697.1 437231..438142(-) (pilD) [Shewanella eurypsychrophilus strain YLB-08]
MSEFITILSHNLWLFSAIAFTFAAVIGSFLNVVIHRFPVMMKREWQQECNLYLNEYHEQLIKPIADKLDKPIDEYPEKYN
LVVPGSACPKCKTDIKPWHNLPIIGWLMLKGKCASCNTSISARYPIIELLTGTAVAFLAYHYGPSWEFAFATLLTFVLIA
LTGIDLDEMLLPDQLTLPLLWLGLLINLNGTFTSPTDAVIGAAAGYMSLWTVFWAFKLITGKEGMGYGDFKLLAVLGAWF
GWQLLPLIILLSSLVGAVVGIALIVSKKLHQGNPIPFGPYIALAGWIAMIWGADINTWYLSTL

Nucleotide


Download         Length: 912 bp        

>NTDB_id=394635 FM038_RS01905 WP_142871697.1 437231..438142(-) (pilD) [Shewanella eurypsychrophilus strain YLB-08]
ATGTCAGAATTTATCACTATTTTGAGTCACAATTTGTGGCTCTTCAGCGCTATCGCTTTTACCTTTGCAGCCGTCATTGG
CAGCTTTCTTAATGTTGTTATACATCGCTTCCCGGTAATGATGAAAAGAGAGTGGCAACAAGAATGTAACCTGTACCTCA
ATGAATACCATGAACAACTGATTAAACCCATCGCAGATAAACTCGACAAACCGATTGATGAGTATCCTGAAAAGTATAAT
TTAGTCGTCCCTGGTTCCGCCTGCCCCAAATGTAAAACAGATATCAAGCCGTGGCATAATCTGCCAATCATCGGCTGGCT
AATGCTTAAGGGAAAGTGCGCCTCATGCAATACATCAATATCGGCACGCTATCCCATCATAGAACTATTAACAGGAACTG
CAGTTGCCTTCCTAGCCTATCACTATGGTCCTAGCTGGGAGTTTGCCTTTGCCACCCTGCTAACATTTGTACTGATAGCA
TTAACAGGCATTGATTTAGATGAGATGCTTCTGCCGGATCAATTAACACTACCTTTGCTTTGGTTAGGTTTACTCATTAA
TCTCAATGGTACTTTTACATCACCAACTGATGCCGTAATAGGTGCAGCAGCTGGCTATATGAGTTTGTGGACTGTCTTCT
GGGCCTTTAAGTTGATAACGGGTAAGGAGGGCATGGGTTATGGTGATTTTAAGCTACTTGCAGTGCTTGGTGCCTGGTTT
GGCTGGCAGTTGCTGCCACTGATTATTTTACTGTCATCCCTCGTCGGCGCAGTTGTTGGTATCGCACTTATCGTGAGTAA
GAAATTACATCAAGGTAACCCAATTCCATTCGGTCCATATATTGCCCTCGCCGGTTGGATTGCCATGATTTGGGGCGCCG
ATATAAACACTTGGTACCTTTCTACTCTGTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-142)

Type IV leader peptidase family (Peptidase_A24)

(153-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

51.027

96.37

0.492
  pilD Acinetobacter nosocomialis M2

49.007

99.67

0.488
  pilD Vibrio campbellii strain DS40M4

49.333

99.01

0.488
  pilD Acinetobacter baumannii D1279779

48.675

99.67

0.485
  pilD Neisseria gonorrhoeae MS11

47.44

96.7

0.459

Multiple sequence alignment