Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   GE023_RS10910 Genome accession   NZ_CP053789
Coordinates   629604..629825 (-) Length   73 a.a.
NCBI ID   WP_003043960.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_98_2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 624604..634825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE023_RS03125 (GE023_003125) dltB 625101..626357 (+) 1257 WP_093998918.1 D-alanyl-lipoteichoic acid biosynthesis protein DltB -
  GE023_RS03130 (GE023_003130) dltC 626373..626612 (+) 240 WP_002984216.1 D-alanine--poly(phosphoribitol) ligase subunit DltC -
  GE023_RS03135 (GE023_003135) dltD 626605..627867 (+) 1263 WP_099983109.1 D-alanyl-lipoteichoic acid biosynthesis protein DltD -
  GE023_RS03140 (GE023_003140) - 628128..628879 (+) 752 Protein_567 IS630 transposase-related protein -
  GE023_RS10910 ccpA 629604..629825 (-) 222 WP_003043960.1 LacI family DNA-binding transcriptional regulator Regulator
  GE023_RS03150 (GE023_003150) - 629979..630815 (-) 837 WP_159304929.1 sugar ABC transporter permease -
  GE023_RS03155 (GE023_003155) - 630815..632176 (-) 1362 WP_003043955.1 carbohydrate ABC transporter permease -
  GE023_RS03160 (GE023_003160) - 632460..633713 (-) 1254 WP_003043954.1 extracellular solute-binding protein -

Sequence

Protein


Download         Length: 73 a.a.        Molecular weight: 8285.33 Da        Isoelectric Point: 7.2764

>NTDB_id=394467 GE023_RS10910 WP_003043960.1 629604..629825(-) (ccpA) [Streptococcus canis strain HL_98_2]
MTSEITIKDIAREVEISVTTVSYVLHQRNDQKISEETRNKALHISNLLNYTPNQAARSLSHNNQTVLSCITNM

Nucleotide


Download         Length: 222 bp        

>NTDB_id=394467 GE023_RS10910 WP_003043960.1 629604..629825(-) (ccpA) [Streptococcus canis strain HL_98_2]
ATGACATCTGAAATTACTATTAAAGATATTGCGCGAGAAGTCGAGATTTCTGTAACAACCGTTTCTTACGTGTTACACCA
GCGCAATGATCAAAAAATTAGTGAAGAAACCCGCAATAAGGCCCTTCATATTAGCAACCTTCTTAACTATACGCCTAATC
AGGCAGCCAGATCATTGTCACACAATAATCAAACAGTGTTGTCCTGTATTACAAATATGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(6-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

38.889

98.63

0.384
  ccpA Streptococcus pneumoniae D39

40

95.89

0.384

Multiple sequence alignment