Detailed information NTG0394463

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: GE023_RS10700
• Genome accession: NZ_CP053789
• Coordinates: 2169380..2170483 (-)
• Length: 367 a.a.
• NCBI ID: WP_093999512.1
• Uniprot ID: -
• Organism: Streptococcus canis strain HL_98_2
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2164380..2175483

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GE023_RS10680 (GE023_010675)	trpS	2164606..2165628 (+)	1023	WP_003045853.1	tryptophan--tRNA ligase	-
GE023_RS10685 (GE023_010680)	guaB	2166004..2167485 (+)	1482	WP_003045855.1	IMP dehydrogenase	-
GE023_RS10690 (GE023_010685)	-	2167648..2168511 (+)	864	WP_003045857.1	GRP family sugar transporter	-
GE023_RS10695 (GE023_010690)	tnpA	2168713..2169177 (+)	465	Protein_2070	IS200/IS605 family transposase	-
GE023_RS10700 (GE023_010695)	recF	2169380..2170483 (-)	1104	WP_093999512.1	DNA replication/repair protein RecF	Machinery gene
GE023_RS10705 (GE023_010700)	yaaA	2170485..2170898 (-)	414	WP_093999511.1	S4 domain-containing protein YaaA	-
GE023_RS10710 (GE023_010705)	-	2170978..2171877 (-)	900	Protein_2073	IS30 family transposase	-
GE023_RS10715 (GE023_010710)	-	2172100..2172924 (-)	825	Protein_2074	DDE-type integrase/transposase/recombinase	-
GE023_RS10725 (GE023_010720)	rlmH	2173244..2173723 (-)	480	WP_093999375.1	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	-
GE023_RS10730 (GE023_010725)	htrA	2173936..2175159 (+)	1224	WP_093999374.1	trypsin-like peptidase domain-containing protein	Regulator

Sequence

Protein

• Length: 367 a.a.
• Molecular weight: 41965.91 Da
• Isoelectric Point: 9.2281

>NTDB_id=394463 GE023_RS10700 WP_093999512.1 2169380..2170483(-) (recF) [Streptococcus canis strain HL_98_2]
MWIKELQLKHYRNYNQLSAEFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRIDKELIHFDQSSVSLSGKISRISGT
VDLEINLSDKGRVTKINSLKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDVDLGQIKPIYLSDLTHYNHVLKQR
NTYLKSAQHIDADFLAVLDEQLADYGSRVMEHRSDFINALEKEANRHHQAISNDLENLSLAYDSSVPFENKGEIYQQFLQ
LLKKNHQKDSFRKTTSVGPHRDDLAFYINDMNANFASQGQHRSLILSLKMAEVSLMKDLTGDNPILLLDDVMSELDNTRQ
TKLLKTVMKENVQTFITTTSLDHLSQLPKNIRIFQVTKGTIRVDSKM

Nucleotide

• Length: 1104 bp

>NTDB_id=394463 GE023_RS10700 WP_093999512.1 2169380..2170483(-) (recF) [Streptococcus canis strain HL_98_2]
ATGTGGATCAAAGAATTACAACTAAAACATTATCGTAATTACAACCAGCTTTCTGCCGAATTTTCTTCTGGTTTAAATGT
CTTTATTGGTAATAATGCTCAAGGAAAAACCAATTTTCTGGAAGCCATCTATTTTTTATCGCTCACAAGAAGCCATCGAA
CGAGGATTGATAAAGAATTAATCCACTTTGACCAGTCAAGTGTCTCCCTTTCTGGTAAGATTAGCCGCATTAGTGGTACT
GTTGATTTGGAAATTAACCTTTCAGACAAAGGACGTGTGACAAAAATCAATTCCTTAAAGCAAGCGAAATTGTCTGACTA
CATTGGAACCATGATGGTTGTGCTCTTTGCACCAGAAGATTTACAACTGGTCAAAGGAGCTCCTAGTCTGCGCCGCAAAT
TCATTGACGTTGATTTGGGACAAATCAAGCCTATTTATTTATCAGATTTGACACATTACAATCATGTACTGAAGCAACGT
AACACTTATTTAAAGAGTGCCCAACATATTGACGCAGATTTTCTAGCTGTTTTAGATGAACAATTAGCTGATTATGGCAG
CCGAGTAATGGAACATCGCAGTGATTTTATCAATGCCCTAGAAAAAGAGGCTAATAGGCACCATCAAGCCATCTCAAACG
ATTTAGAAAACCTTTCACTTGCTTATGACTCCTCAGTTCCTTTTGAAAACAAAGGGGAAATTTACCAGCAATTCTTACAG
CTACTTAAAAAAAATCATCAGAAAGATTCCTTCCGTAAAACTACCAGTGTGGGCCCACATCGAGATGATCTGGCTTTTTA
CATTAATGATATGAATGCTAATTTTGCAAGCCAAGGACAACACCGTAGCCTTATACTCTCTTTAAAAATGGCTGAAGTCA
GTTTAATGAAAGACTTGACAGGAGATAATCCTATCCTTTTATTGGATGATGTCATGAGTGAGTTAGACAATACACGGCAA
ACAAAGCTACTTAAAACAGTGATGAAAGAAAATGTCCAAACTTTTATCACAACAACAAGCTTGGATCATCTATCACAATT
ACCAAAAAATATCCGTATTTTTCAGGTGACAAAAGGAACCATTCGAGTTGATTCCAAAATGTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-360)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	62.466	99.455	0.621
recF	Bacillus subtilis subsp. subtilis str. 168	43.28	100	0.439