Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FPL20_RS03460 Genome accession   NZ_CP045478
Coordinates   655327..655845 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain JD-014     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 650327..660845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL20_RS03440 (FPL20_GE00623) yyzM 651401..651607 (+) 207 WP_003226838.1 DUF951 domain-containing protein -
  FPL20_RS03445 (FPL20_GE00624) yyaE 651658..653661 (+) 2004 WP_003244290.1 molybdopterin-dependent oxidoreductase -
  FPL20_RS03450 (FPL20_GE00625) ychF 653788..654888 (+) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  FPL20_RS03455 (FPL20_GE00626) rpsF 654999..655286 (+) 288 WP_003244064.1 30S ribosomal protein S6 -
  FPL20_RS03460 (FPL20_GE00627) ssbA 655327..655845 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  FPL20_RS03465 (FPL20_GE00628) rpsR 655889..656128 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  FPL20_RS03470 (FPL20_GE00629) xth 656193..656951 (+) 759 WP_003243194.1 exodeoxyribonuclease III -
  FPL20_RS03475 (FPL20_GE00630) ccpB 657010..657945 (+) 936 WP_003243573.1 transcriptional regulator CcpB -
  FPL20_RS03480 (FPL20_GE00631) yyaH 658001..658381 (+) 381 WP_003244460.1 VOC family protein -
  FPL20_RS03485 (FPL20_GE00632) maa 658399..658953 (+) 555 WP_003242928.1 sugar O-acetyltransferase -
  FPL20_RS03490 (FPL20_GE00633) yyaJ 658987..660342 (-) 1356 WP_003243011.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=394464 FPL20_RS03460 WP_003219228.1 655327..655845(+) (ssbA) [Bacillus subtilis strain JD-014]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=394464 FPL20_RS03460 WP_003219228.1 655327..655845(+) (ssbA) [Bacillus subtilis strain JD-014]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment